miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24369 3' -59 NC_005264.1 + 118687 0.7 0.585409
Target:  5'- -gAUACGcGCUCGCGCGGCuuaccuGCCCUCc -3'
miRNA:   3'- ugUAUGUcUGAGUGCGCCG------CGGGGGc -5'
24369 3' -59 NC_005264.1 + 6425 0.69 0.615207
Target:  5'- cACGUACAcuCUCGCgGCGGCGUCgCUGg -3'
miRNA:   3'- -UGUAUGUcuGAGUG-CGCCGCGGgGGC- -5'
24369 3' -59 NC_005264.1 + 125452 0.69 0.615207
Target:  5'- cACGUACAcuCUCGCgGCGGCGUCgCUGg -3'
miRNA:   3'- -UGUAUGUcuGAGUG-CGCCGCGGgGGC- -5'
24369 3' -59 NC_005264.1 + 44998 0.69 0.625173
Target:  5'- uGCAUGCGcACUC-CGCcGCGCCUCCc -3'
miRNA:   3'- -UGUAUGUcUGAGuGCGcCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 144291 0.69 0.632152
Target:  5'- cGCuccgACuGACgccggCGCGCccucagggggagacGGCGCCCCCGa -3'
miRNA:   3'- -UGua--UGuCUGa----GUGCG--------------CCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 87107 0.69 0.645112
Target:  5'- cGCAccCAGACUgGCcucCGGCGCCCgCGg -3'
miRNA:   3'- -UGUauGUCUGAgUGc--GCCGCGGGgGC- -5'
24369 3' -59 NC_005264.1 + 25940 0.69 0.645112
Target:  5'- uGCAcgACGGGCUCACGUacGCGCCCaCUu -3'
miRNA:   3'- -UGUa-UGUCUGAGUGCGc-CGCGGG-GGc -5'
24369 3' -59 NC_005264.1 + 116431 0.69 0.655071
Target:  5'- gGCGUGCAGcCUCGCgGCGGaccuGgCCCUGa -3'
miRNA:   3'- -UGUAUGUCuGAGUG-CGCCg---CgGGGGC- -5'
24369 3' -59 NC_005264.1 + 39043 0.69 0.655071
Target:  5'- cCAguCGGACuggccgaguUCGCGCGGCGguccaCCCCCGg -3'
miRNA:   3'- uGUauGUCUG---------AGUGCGCCGC-----GGGGGC- -5'
24369 3' -59 NC_005264.1 + 115017 0.69 0.655071
Target:  5'- aACAUcuGCAGGCUCuucuGCGCcuuauGCGCCCCgGc -3'
miRNA:   3'- -UGUA--UGUCUGAG----UGCGc----CGCGGGGgC- -5'
24369 3' -59 NC_005264.1 + 154539 0.69 0.655071
Target:  5'- aGCGUGCcGGCgauggCACGCGGaucUCCCCGg -3'
miRNA:   3'- -UGUAUGuCUGa----GUGCGCCgc-GGGGGC- -5'
24369 3' -59 NC_005264.1 + 119673 0.69 0.655071
Target:  5'- cGCgAUAgAGGCUCACGCGcCcCCCCCu -3'
miRNA:   3'- -UG-UAUgUCUGAGUGCGCcGcGGGGGc -5'
24369 3' -59 NC_005264.1 + 158070 0.69 0.655071
Target:  5'- cCAguCGGACuggccgaguUCGCGCGGCGguccaCCCCCGg -3'
miRNA:   3'- uGUauGUCUG---------AGUGCGCCGC-----GGGGGC- -5'
24369 3' -59 NC_005264.1 + 646 0.69 0.655071
Target:  5'- cGCgAUAgAGGCUCACGCGcCcCCCCCu -3'
miRNA:   3'- -UG-UAUgUCUGAGUGCGCcGcGGGGGc -5'
24369 3' -59 NC_005264.1 + 116111 0.68 0.665012
Target:  5'- uACAUGcCAGACauaGCGCuGCGCCUCUGc -3'
miRNA:   3'- -UGUAU-GUCUGag-UGCGcCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 51991 0.68 0.674929
Target:  5'- aGCuauUGCGGACgucgCGCGCGGaGCgaCCCCGc -3'
miRNA:   3'- -UGu--AUGUCUGa---GUGCGCCgCG--GGGGC- -5'
24369 3' -59 NC_005264.1 + 112976 0.68 0.674929
Target:  5'- cGCGUAUAcGCU-GCGCGGCGUcaccagggCCCCGg -3'
miRNA:   3'- -UGUAUGUcUGAgUGCGCCGCG--------GGGGC- -5'
24369 3' -59 NC_005264.1 + 30836 0.68 0.681851
Target:  5'- ---aACGGGCUCGCGUcgucgucggcggcgGcGCGCCgCCCGg -3'
miRNA:   3'- uguaUGUCUGAGUGCG--------------C-CGCGG-GGGC- -5'
24369 3' -59 NC_005264.1 + 149862 0.68 0.681851
Target:  5'- ---aACGGGCUCGCGUcgucgucggcggcgGcGCGCCgCCCGg -3'
miRNA:   3'- uguaUGUCUGAGUGCG--------------C-CGCGG-GGGC- -5'
24369 3' -59 NC_005264.1 + 18675 0.68 0.684812
Target:  5'- cACGUGCcuGACUCGCcggguuggaaaaGCacucuuacGGUGCCCCCGu -3'
miRNA:   3'- -UGUAUGu-CUGAGUG------------CG--------CCGCGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.