miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24369 3' -59 NC_005264.1 + 25880 0.66 0.815006
Target:  5'- gAC-UGCAGACUCcgcacagugggGCGCuGCGCCUUCu -3'
miRNA:   3'- -UGuAUGUCUGAG-----------UGCGcCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 18675 0.68 0.684812
Target:  5'- cACGUGCcuGACUCGCcggguuggaaaaGCacucuuacGGUGCCCCCGu -3'
miRNA:   3'- -UGUAUGu-CUGAGUG------------CG--------CCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 51991 0.68 0.674929
Target:  5'- aGCuauUGCGGACgucgCGCGCGGaGCgaCCCCGc -3'
miRNA:   3'- -UGu--AUGUCUGa---GUGCGCCgCG--GGGGC- -5'
24369 3' -59 NC_005264.1 + 129904 1.07 0.002262
Target:  5'- aACAUACAGACUCACGCGGCGCCCCCGc -3'
miRNA:   3'- -UGUAUGUCUGAGUGCGCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 39568 0.66 0.788948
Target:  5'- gGCAaGCcgGGACugaucuaccuUCGCGUGGCGCCgCCu -3'
miRNA:   3'- -UGUaUG--UCUG----------AGUGCGCCGCGGgGGc -5'
24369 3' -59 NC_005264.1 + 140059 0.66 0.779983
Target:  5'- gGCGUgaGCAGugUCGC-C-GCGCCCCUc -3'
miRNA:   3'- -UGUA--UGUCugAGUGcGcCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 142313 0.67 0.770893
Target:  5'- uGCA-ACGGGCgcaACGC-GUGCCCCUGg -3'
miRNA:   3'- -UGUaUGUCUGag-UGCGcCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 141273 0.67 0.761685
Target:  5'- ---cACGGuCUCgGCGcCGGCGUCCUCGg -3'
miRNA:   3'- uguaUGUCuGAG-UGC-GCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 162450 0.67 0.73344
Target:  5'- -gGUACAcGAC-CGCGcCGGCgcuGCCCCCc -3'
miRNA:   3'- ugUAUGU-CUGaGUGC-GCCG---CGGGGGc -5'
24369 3' -59 NC_005264.1 + 38801 0.68 0.71418
Target:  5'- ---gACGuACUC-CGCGGCGaCCCCGg -3'
miRNA:   3'- uguaUGUcUGAGuGCGCCGCgGGGGC- -5'
24369 3' -59 NC_005264.1 + 88118 0.68 0.71418
Target:  5'- aGCAggagACAGuuUCGCGCGccGCGCCCUa- -3'
miRNA:   3'- -UGUa---UGUCugAGUGCGC--CGCGGGGgc -5'
24369 3' -59 NC_005264.1 + 37667 0.67 0.752367
Target:  5'- cGCgAUGCGcGACgggCGCGCGGCccucGCCCUCc -3'
miRNA:   3'- -UG-UAUGU-CUGa--GUGCGCCG----CGGGGGc -5'
24369 3' -59 NC_005264.1 + 7865 0.66 0.806467
Target:  5'- -uGUGgGGGCg-GCGuCGGCGCCCCa- -3'
miRNA:   3'- ugUAUgUCUGagUGC-GCCGCGGGGgc -5'
24369 3' -59 NC_005264.1 + 65397 0.68 0.71418
Target:  5'- uACGUcuauCAGAUcCGCgGCGGCGCCCgCa -3'
miRNA:   3'- -UGUAu---GUCUGaGUG-CGCCGCGGGgGc -5'
24369 3' -59 NC_005264.1 + 533 0.66 0.806467
Target:  5'- gACcgAuCAGAC-C-CGCGGCGUUCCCu -3'
miRNA:   3'- -UGuaU-GUCUGaGuGCGCCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 152739 0.67 0.752367
Target:  5'- cACGUcACGGACacggC-CGCGaUGCCCCCGg -3'
miRNA:   3'- -UGUA-UGUCUGa---GuGCGCcGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 20135 0.68 0.71418
Target:  5'- -gAUGCGGGCagGCGaUGGCGCgCCgCCGg -3'
miRNA:   3'- ugUAUGUCUGagUGC-GCCGCG-GG-GGC- -5'
24369 3' -59 NC_005264.1 + 30836 0.68 0.681851
Target:  5'- ---aACGGGCUCGCGUcgucgucggcggcgGcGCGCCgCCCGg -3'
miRNA:   3'- uguaUGUCUGAGUGCG--------------C-CGCGG-GGGC- -5'
24369 3' -59 NC_005264.1 + 139139 0.66 0.788948
Target:  5'- gGCGUugAGGgUCGguCGGCGUUCCCGc -3'
miRNA:   3'- -UGUAugUCUgAGUgcGCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 101306 0.66 0.77908
Target:  5'- uACGUGCGGucauacgaACUCuuucuggauauacGCGCGGCGCUagCCGa -3'
miRNA:   3'- -UGUAUGUC--------UGAG-------------UGCGCCGCGGg-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.