Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24369 | 5' | -49.8 | NC_005264.1 | + | 126233 | 0.7 | 0.954882 |
Target: 5'- gAUCGGGAGCGCucaaggcguaucuuUAUACcaucCUGGGCg -3' miRNA: 3'- -UAGCUCUUGCGu-------------AUAUGuca-GACCCG- -5' |
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24369 | 5' | -49.8 | NC_005264.1 | + | 134385 | 0.7 | 0.953233 |
Target: 5'- uUCGGGGACGCAUugaGCAGUUcacGGCc -3' miRNA: 3'- uAGCUCUUGCGUAua-UGUCAGac-CCG- -5' |
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24369 | 5' | -49.8 | NC_005264.1 | + | 85444 | 0.71 | 0.939574 |
Target: 5'- --aGGGAGCGCu--UGCcggcGUCUGGGCc -3' miRNA: 3'- uagCUCUUGCGuauAUGu---CAGACCCG- -5' |
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24369 | 5' | -49.8 | NC_005264.1 | + | 80108 | 0.71 | 0.929174 |
Target: 5'- uAUCGAGGugGCGcuaGCGGUCcgcaagGGGCc -3' miRNA: 3'- -UAGCUCUugCGUauaUGUCAGa-----CCCG- -5' |
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24369 | 5' | -49.8 | NC_005264.1 | + | 69622 | 0.71 | 0.929174 |
Target: 5'- -gUGAGAACGaCAggcUAUugGGgCUGGGCa -3' miRNA: 3'- uaGCUCUUGC-GU---AUAugUCaGACCCG- -5' |
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24369 | 5' | -49.8 | NC_005264.1 | + | 134079 | 0.72 | 0.898605 |
Target: 5'- cAUUuAGAGCGCAgcuagaGCAcGUCUGGGCg -3' miRNA: 3'- -UAGcUCUUGCGUaua---UGU-CAGACCCG- -5' |
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24369 | 5' | -49.8 | NC_005264.1 | + | 22220 | 0.73 | 0.877205 |
Target: 5'- aGUgGAGucguCGCcucGUcgGCGGUCUGGGCg -3' miRNA: 3'- -UAgCUCuu--GCG---UAuaUGUCAGACCCG- -5' |
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24369 | 5' | -49.8 | NC_005264.1 | + | 45776 | 0.74 | 0.845351 |
Target: 5'- -gCGAuGGGCGCcgGagcggcuauUGCGGUCUGGGCc -3' miRNA: 3'- uaGCU-CUUGCGuaU---------AUGUCAGACCCG- -5' |
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24369 | 5' | -49.8 | NC_005264.1 | + | 129943 | 1.12 | 0.007563 |
Target: 5'- gAUCGAGAACGCAUAUACAGUCUGGGCg -3' miRNA: 3'- -UAGCUCUUGCGUAUAUGUCAGACCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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