miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 3' -53.3 NC_005264.1 + 39054 0.69 0.890536
Target:  5'- gGCCGAGuucGCGCggcgguccacccCCGGACgCCGGCUCg -3'
miRNA:   3'- gCGGUUU---CGCGau----------GGUUUG-GGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 39218 0.76 0.522238
Target:  5'- cCGCCGcGGCGCUGgCGGGgagggccugcguuCCCGGCUCg -3'
miRNA:   3'- -GCGGUuUCGCGAUgGUUU-------------GGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 42360 0.7 0.856547
Target:  5'- cCGCC--GGCGaugGCCGGugCUGGCUCc -3'
miRNA:   3'- -GCGGuuUCGCga-UGGUUugGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 42701 0.66 0.960608
Target:  5'- uCGCCGGccGGCGCU-CCGuccuCCUG-CUCg -3'
miRNA:   3'- -GCGGUU--UCGCGAuGGUuu--GGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 43899 0.67 0.952513
Target:  5'- gCGCCGGagacgauAGCGCgGCCGucGCCuCGACgUCg -3'
miRNA:   3'- -GCGGUU-------UCGCGaUGGUu-UGG-GCUG-AG- -5'
24370 3' -53.3 NC_005264.1 + 46623 0.66 0.975926
Target:  5'- uCGUgGGAcCGCgugGCCGAAgaauucggcaucCCCGACUCg -3'
miRNA:   3'- -GCGgUUUcGCGa--UGGUUU------------GGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 49209 0.68 0.924077
Target:  5'- aCGCCc--GCGCUACCuggAAACgCGACa- -3'
miRNA:   3'- -GCGGuuuCGCGAUGG---UUUGgGCUGag -5'
24370 3' -53.3 NC_005264.1 + 49898 0.71 0.787285
Target:  5'- uGCCAAAGCGUUGcgcgcCCAAAUCCcGCUg -3'
miRNA:   3'- gCGGUUUCGCGAU-----GGUUUGGGcUGAg -5'
24370 3' -53.3 NC_005264.1 + 50455 0.79 0.375412
Target:  5'- cCGCCAAGGCGCUGCUcAACCUGGu-- -3'
miRNA:   3'- -GCGGUUUCGCGAUGGuUUGGGCUgag -5'
24370 3' -53.3 NC_005264.1 + 50583 0.66 0.973283
Target:  5'- gCGCaCGcGGCGCUGagcAGCCCGGCg- -3'
miRNA:   3'- -GCG-GUuUCGCGAUgguUUGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 51654 0.66 0.964106
Target:  5'- aCGUUu-AGCGCUGCCAcucgcguaGACCCGGu-- -3'
miRNA:   3'- -GCGGuuUCGCGAUGGU--------UUGGGCUgag -5'
24370 3' -53.3 NC_005264.1 + 53661 0.66 0.973283
Target:  5'- uGCCAgaGAGCGUUACUAugaacaaggugGACCUGAg-- -3'
miRNA:   3'- gCGGU--UUCGCGAUGGU-----------UUGGGCUgag -5'
24370 3' -53.3 NC_005264.1 + 54115 0.67 0.954534
Target:  5'- aCGCCAccugaaauggaguuGGCGCUGCCcaccaCCGACg- -3'
miRNA:   3'- -GCGGUu-------------UCGCGAUGGuuug-GGCUGag -5'
24370 3' -53.3 NC_005264.1 + 54537 0.66 0.970437
Target:  5'- uGCCAGuAGUGUUcGCCG---CCGACUCg -3'
miRNA:   3'- gCGGUU-UCGCGA-UGGUuugGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 59712 0.68 0.912486
Target:  5'- gCGCCGcgccGGCgGCUACCGcGCCgGACg- -3'
miRNA:   3'- -GCGGUu---UCG-CGAUGGUuUGGgCUGag -5'
24370 3' -53.3 NC_005264.1 + 60538 0.7 0.855756
Target:  5'- aGCCAuuGCGCUcuggcacGCCuguGCCCGuuUCg -3'
miRNA:   3'- gCGGUuuCGCGA-------UGGuu-UGGGCugAG- -5'
24370 3' -53.3 NC_005264.1 + 62395 0.66 0.96738
Target:  5'- -uCCGGAGCGCagaguaauucUGuuGGGCCCGGCUUc -3'
miRNA:   3'- gcGGUUUCGCG----------AUggUUUGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 63404 0.66 0.975926
Target:  5'- gCGCCGGAGa--UGCCAAagcaaaccGCCCGAUg- -3'
miRNA:   3'- -GCGGUUUCgcgAUGGUU--------UGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 66306 0.66 0.964106
Target:  5'- -uUCGAGGUcCUGCCAu-CCUGACUCa -3'
miRNA:   3'- gcGGUUUCGcGAUGGUuuGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 66352 0.67 0.956882
Target:  5'- aGCUucgGAGGCGCUcuACgAGACguugguggCCGACUCg -3'
miRNA:   3'- gCGG---UUUCGCGA--UGgUUUG--------GGCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.