miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 3' -53.3 NC_005264.1 + 16769 0.66 0.975926
Target:  5'- gCGCgGGGGCGCgcuguUCGGGCCgGACg- -3'
miRNA:   3'- -GCGgUUUCGCGau---GGUUUGGgCUGag -5'
24370 3' -53.3 NC_005264.1 + 17037 0.68 0.912486
Target:  5'- uCGCCAGcAGCGCgGCCGcuaagagcAugCCGAC-Cg -3'
miRNA:   3'- -GCGGUU-UCGCGaUGGU--------UugGGCUGaG- -5'
24370 3' -53.3 NC_005264.1 + 17676 0.7 0.831944
Target:  5'- aGCCucAGGCGCaGCCGAGgCCGcggcgGCUCg -3'
miRNA:   3'- gCGGu-UUCGCGaUGGUUUgGGC-----UGAG- -5'
24370 3' -53.3 NC_005264.1 + 17763 0.76 0.553573
Target:  5'- gCGgCAAGGagaGCUGCCcGGCCCGGCUUc -3'
miRNA:   3'- -GCgGUUUCg--CGAUGGuUUGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 21061 0.71 0.814587
Target:  5'- gGCCuuAGCGCguugGCCAAGCCauaugccguGCUCg -3'
miRNA:   3'- gCGGuuUCGCGa---UGGUUUGGgc-------UGAG- -5'
24370 3' -53.3 NC_005264.1 + 23150 0.69 0.891221
Target:  5'- aGCCcaggcGAGUGCUuggaauuuucuaugGCCAuuauugcGCCCGGCUCg -3'
miRNA:   3'- gCGGu----UUCGCGA--------------UGGUu------UGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 23413 0.67 0.944286
Target:  5'- gGCCGAGcacGCGUacGCCAGcgguGCCCGuCUCg -3'
miRNA:   3'- gCGGUUU---CGCGa-UGGUU----UGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 24962 0.69 0.871907
Target:  5'- -aCCAGGGCGCUgcGCCGAAUCgGAaaCUCu -3'
miRNA:   3'- gcGGUUUCGCGA--UGGUUUGGgCU--GAG- -5'
24370 3' -53.3 NC_005264.1 + 25605 0.67 0.956882
Target:  5'- gCGCCGGgccGGCGUUGCgGAACaCGGCg- -3'
miRNA:   3'- -GCGGUU---UCGCGAUGgUUUGgGCUGag -5'
24370 3' -53.3 NC_005264.1 + 26029 0.67 0.944286
Target:  5'- uCGCC-AAGCGUccGCCAGcuuuguccGCCCGGC-Ca -3'
miRNA:   3'- -GCGGuUUCGCGa-UGGUU--------UGGGCUGaG- -5'
24370 3' -53.3 NC_005264.1 + 27539 0.68 0.918405
Target:  5'- aCGCCucgGAGCGCagUACCuc-CUCGACUUu -3'
miRNA:   3'- -GCGGu--UUCGCG--AUGGuuuGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 27657 0.66 0.975926
Target:  5'- gGCCAcgcGGCGCUcggACCGAgguACgCGGCUg -3'
miRNA:   3'- gCGGUu--UCGCGA---UGGUU---UGgGCUGAg -5'
24370 3' -53.3 NC_005264.1 + 28679 0.67 0.952922
Target:  5'- uGUCAuGGCGC-GCCGAGCUacaGAUUCu -3'
miRNA:   3'- gCGGUuUCGCGaUGGUUUGGg--CUGAG- -5'
24370 3' -53.3 NC_005264.1 + 33026 0.69 0.886376
Target:  5'- aCGCUAcGGgGCUccGCCAGcuACgCGACUCa -3'
miRNA:   3'- -GCGGUuUCgCGA--UGGUU--UGgGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 33280 0.66 0.96738
Target:  5'- gCGCCccuGAGgGCggcGCCGcacagGACCCG-CUCg -3'
miRNA:   3'- -GCGGu--UUCgCGa--UGGU-----UUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 33334 0.73 0.708811
Target:  5'- uCGCCuccGGCGCcGCCAAACCCuGCg- -3'
miRNA:   3'- -GCGGuu-UCGCGaUGGUUUGGGcUGag -5'
24370 3' -53.3 NC_005264.1 + 33941 0.72 0.748899
Target:  5'- gGCCGuGGCGCgccgggACCGcGCCCGAUa- -3'
miRNA:   3'- gCGGUuUCGCGa-----UGGUuUGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 34129 0.68 0.934676
Target:  5'- gCGUCGAGGCGC----GAGCCCGcCUCc -3'
miRNA:   3'- -GCGGUUUCGCGauggUUUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 34225 0.68 0.929501
Target:  5'- uCGCCuguacuuuGAGCGauagaCGAACCCGGCUUc -3'
miRNA:   3'- -GCGGu-------UUCGCgaug-GUUUGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 34367 0.67 0.956882
Target:  5'- gGCC-AAGCGCgaacuUGCCGAcgccaaagacggGCgCGGCUCg -3'
miRNA:   3'- gCGGuUUCGCG-----AUGGUU------------UGgGCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.