miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 3' -53.3 NC_005264.1 + 117039 0.72 0.768344
Target:  5'- uCGCCAua-CGCUGCaCAGACuCCGAuCUCg -3'
miRNA:   3'- -GCGGUuucGCGAUG-GUUUG-GGCU-GAG- -5'
24370 3' -53.3 NC_005264.1 + 128636 0.72 0.768344
Target:  5'- aCGCCAAGuauGCGCU-CCAuGCCgCGGCUg -3'
miRNA:   3'- -GCGGUUU---CGCGAuGGUuUGG-GCUGAg -5'
24370 3' -53.3 NC_005264.1 + 76275 0.72 0.768344
Target:  5'- uCGCCAGAGUGCgc----ACCCGACUg -3'
miRNA:   3'- -GCGGUUUCGCGaugguuUGGGCUGAg -5'
24370 3' -53.3 NC_005264.1 + 102309 0.72 0.768344
Target:  5'- uGCCAGAGCGCaaugGCU--GCgCCGAUUCc -3'
miRNA:   3'- gCGGUUUCGCGa---UGGuuUG-GGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 156946 0.72 0.777882
Target:  5'- cCGCCGAGGCGUacuaccucaacUACUGGACCaCG-CUCg -3'
miRNA:   3'- -GCGGUUUCGCG-----------AUGGUUUGG-GCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 49898 0.71 0.787285
Target:  5'- uGCCAAAGCGUUGcgcgcCCAAAUCCcGCUg -3'
miRNA:   3'- gCGGUUUCGCGAU-----GGUUUGGGcUGAg -5'
24370 3' -53.3 NC_005264.1 + 93041 0.71 0.787285
Target:  5'- gCGCCGAAugcgugcugcuGCGCUGCCAugcggccuccGCCCGaAUUCg -3'
miRNA:   3'- -GCGGUUU-----------CGCGAUGGUu---------UGGGC-UGAG- -5'
24370 3' -53.3 NC_005264.1 + 68027 0.71 0.796543
Target:  5'- gCGCCAAAGagcggauaacCGCUuCCGuGCCCGACg- -3'
miRNA:   3'- -GCGGUUUC----------GCGAuGGUuUGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 145049 0.71 0.804744
Target:  5'- cCGCCAGguaccuuGGCGCUcuagaaGCCGGGCCgGGCa- -3'
miRNA:   3'- -GCGGUU-------UCGCGA------UGGUUUGGgCUGag -5'
24370 3' -53.3 NC_005264.1 + 70320 0.71 0.805646
Target:  5'- cCGCCGgcGCGCUgACCGAGUCCGucaACUCc -3'
miRNA:   3'- -GCGGUuuCGCGA-UGGUUUGGGC---UGAG- -5'
24370 3' -53.3 NC_005264.1 + 126297 0.71 0.805646
Target:  5'- uGCCGcuuucGGGCGCgcgGCCGAuggcuccugcGCCCGcCUCg -3'
miRNA:   3'- gCGGU-----UUCGCGa--UGGUU----------UGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 119216 0.71 0.814587
Target:  5'- uCGCCGgcGCGCUuCCGAGCCuCGAa-- -3'
miRNA:   3'- -GCGGUuuCGCGAuGGUUUGG-GCUgag -5'
24370 3' -53.3 NC_005264.1 + 21061 0.71 0.814587
Target:  5'- gGCCuuAGCGCguugGCCAAGCCauaugccguGCUCg -3'
miRNA:   3'- gCGGuuUCGCGa---UGGUUUGGgc-------UGAG- -5'
24370 3' -53.3 NC_005264.1 + 189 0.71 0.814587
Target:  5'- uCGCCGgcGCGCUuCCGAGCCuCGAa-- -3'
miRNA:   3'- -GCGGUuuCGCGAuGGUUUGG-GCUgag -5'
24370 3' -53.3 NC_005264.1 + 87152 0.71 0.823356
Target:  5'- gCGCCGAaagacGGCGCUGC---GCgCGACUCc -3'
miRNA:   3'- -GCGGUU-----UCGCGAUGguuUGgGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 122788 0.71 0.823356
Target:  5'- cCGCCGGGGCGCUG-CGGGCCCu---- -3'
miRNA:   3'- -GCGGUUUCGCGAUgGUUUGGGcugag -5'
24370 3' -53.3 NC_005264.1 + 3762 0.71 0.823356
Target:  5'- cCGCCGGGGCGCUG-CGGGCCCu---- -3'
miRNA:   3'- -GCGGUUUCGCGAUgGUUUGGGcugag -5'
24370 3' -53.3 NC_005264.1 + 9953 0.7 0.831944
Target:  5'- aCGCCGgcGAGgGaCUGCCGGACCCGuggGCg- -3'
miRNA:   3'- -GCGGU--UUCgC-GAUGGUUUGGGC---UGag -5'
24370 3' -53.3 NC_005264.1 + 69583 0.7 0.831944
Target:  5'- gGCCcuGGCGCcACCuAGCCCG-CUUg -3'
miRNA:   3'- gCGGuuUCGCGaUGGuUUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 17676 0.7 0.831944
Target:  5'- aGCCucAGGCGCaGCCGAGgCCGcggcgGCUCg -3'
miRNA:   3'- gCGGu-UUCGCGaUGGUUUgGGC-----UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.