miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 3' -53.3 NC_005264.1 + 2990 0.66 0.970437
Target:  5'- -uCCAucGAGCGCcgACUggGCCggCGGCUCg -3'
miRNA:   3'- gcGGU--UUCGCGa-UGGuuUGG--GCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 133226 0.66 0.970437
Target:  5'- gCGCCGuAGaGCUuucgaaGCCAAGCgCCGACg- -3'
miRNA:   3'- -GCGGUuUCgCGA------UGGUUUG-GGCUGag -5'
24370 3' -53.3 NC_005264.1 + 54537 0.66 0.970437
Target:  5'- uGCCAGuAGUGUUcGCCG---CCGACUCg -3'
miRNA:   3'- gCGGUU-UCGCGA-UGGUuugGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 158813 0.66 0.970437
Target:  5'- uCGCCGAGGCcUUGCC---CCCG-CUCu -3'
miRNA:   3'- -GCGGUUUCGcGAUGGuuuGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 99803 0.66 0.970437
Target:  5'- gGCCGAGGCGauggucGCCGAcCCCGGg-- -3'
miRNA:   3'- gCGGUUUCGCga----UGGUUuGGGCUgag -5'
24370 3' -53.3 NC_005264.1 + 149577 0.66 0.970437
Target:  5'- aGCCccgggcggaGGGGgGCUGCuCGAugCCGAgUCu -3'
miRNA:   3'- gCGG---------UUUCgCGAUG-GUUugGGCUgAG- -5'
24370 3' -53.3 NC_005264.1 + 117940 0.66 0.970141
Target:  5'- uGCUcAAGCGCUAUCAcgagaugauauuuGGCCCGGa-- -3'
miRNA:   3'- gCGGuUUCGCGAUGGU-------------UUGGGCUgag -5'
24370 3' -53.3 NC_005264.1 + 33280 0.66 0.96738
Target:  5'- gCGCCccuGAGgGCggcGCCGcacagGACCCG-CUCg -3'
miRNA:   3'- -GCGGu--UUCgCGa--UGGU-----UUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 62395 0.66 0.96738
Target:  5'- -uCCGGAGCGCagaguaauucUGuuGGGCCCGGCUUc -3'
miRNA:   3'- gcGGUUUCGCG----------AUggUUUGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 152307 0.66 0.96738
Target:  5'- gCGCCccuGAGgGCggcGCCGcacagGACCCG-CUCg -3'
miRNA:   3'- -GCGGu--UUCgCGa--UGGU-----UUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 144673 0.66 0.96738
Target:  5'- gCGCC-GAGCGUcaGCCGAcaaGCCUGuCUCu -3'
miRNA:   3'- -GCGGuUUCGCGa-UGGUU---UGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 147247 0.66 0.964106
Target:  5'- uGCCGGAGcCGCaGCUgcGCCCGcaaGCUUg -3'
miRNA:   3'- gCGGUUUC-GCGaUGGuuUGGGC---UGAG- -5'
24370 3' -53.3 NC_005264.1 + 66306 0.66 0.964106
Target:  5'- -uUCGAGGUcCUGCCAu-CCUGACUCa -3'
miRNA:   3'- gcGGUUUCGcGAUGGUuuGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 134734 0.66 0.964106
Target:  5'- aGCCAcgauAGGCGCcggUGCgCAAuaacGCCUGACUUu -3'
miRNA:   3'- gCGGU----UUCGCG---AUG-GUU----UGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 139940 0.66 0.964106
Target:  5'- aCGaCCGAcgcGGUGCUGCUAucguGCCCGAa-- -3'
miRNA:   3'- -GC-GGUU---UCGCGAUGGUu---UGGGCUgag -5'
24370 3' -53.3 NC_005264.1 + 146722 0.66 0.964106
Target:  5'- uGCCugauGAGCGggGCagaaaGAACCCGGC-Cg -3'
miRNA:   3'- gCGGu---UUCGCgaUGg----UUUGGGCUGaG- -5'
24370 3' -53.3 NC_005264.1 + 51654 0.66 0.964106
Target:  5'- aCGUUu-AGCGCUGCCAcucgcguaGACCCGGu-- -3'
miRNA:   3'- -GCGGuuUCGCGAUGGU--------UUGGGCUgag -5'
24370 3' -53.3 NC_005264.1 + 100174 0.66 0.964106
Target:  5'- aCGCCGAAGCGaucuuggcgaaCUA-CGAGCgCGACUUc -3'
miRNA:   3'- -GCGGUUUCGC-----------GAUgGUUUGgGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 73150 0.66 0.963766
Target:  5'- uGCCAGcugguAGCGCUcaugcccACCGccAGCUCGuCUCa -3'
miRNA:   3'- gCGGUU-----UCGCGA-------UGGU--UUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 42701 0.66 0.960608
Target:  5'- uCGCCGGccGGCGCU-CCGuccuCCUG-CUCg -3'
miRNA:   3'- -GCGGUU--UCGCGAuGGUuu--GGGCuGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.