miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 3' -53.3 NC_005264.1 + 146310 0.66 0.960608
Target:  5'- aCGCgcAAGCGCUaagaGCUAu-CCUGACUCu -3'
miRNA:   3'- -GCGguUUCGCGA----UGGUuuGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 42701 0.66 0.960608
Target:  5'- uCGCCGGccGGCGCU-CCGuccuCCUG-CUCg -3'
miRNA:   3'- -GCGGUU--UCGCGAuGGUuu--GGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 34367 0.67 0.956882
Target:  5'- gGCC-AAGCGCgaacuUGCCGAcgccaaagacggGCgCGGCUCg -3'
miRNA:   3'- gCGGuUUCGCG-----AUGGUU------------UGgGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 125929 0.67 0.956882
Target:  5'- uGCCuuGGCuGCUGCCGuugcgcgaaaGACUcgaaCGGCUCg -3'
miRNA:   3'- gCGGuuUCG-CGAUGGU----------UUGG----GCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 6903 0.67 0.956882
Target:  5'- uGCCuuGGCuGCUGCCGuugcgcgaaaGACUcgaaCGGCUCg -3'
miRNA:   3'- gCGGuuUCG-CGAUGGU----------UUGG----GCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 25605 0.67 0.956882
Target:  5'- gCGCCGGgccGGCGUUGCgGAACaCGGCg- -3'
miRNA:   3'- -GCGGUU---UCGCGAUGgUUUGgGCUGag -5'
24370 3' -53.3 NC_005264.1 + 143745 0.67 0.956882
Target:  5'- gCGCCGccGCGgUGCagu-CCUGGCUCc -3'
miRNA:   3'- -GCGGUuuCGCgAUGguuuGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 128599 0.67 0.956882
Target:  5'- gCGCaCGAGGCGggACgAAACCCGuccguCUUg -3'
miRNA:   3'- -GCG-GUUUCGCgaUGgUUUGGGCu----GAG- -5'
24370 3' -53.3 NC_005264.1 + 120338 0.67 0.956882
Target:  5'- gGCCAcAGUGCUACagAAGCUgGACa- -3'
miRNA:   3'- gCGGUuUCGCGAUGg-UUUGGgCUGag -5'
24370 3' -53.3 NC_005264.1 + 101586 0.67 0.956882
Target:  5'- aCGCCGAGGCGC-GCCGugAGCUgGAg-- -3'
miRNA:   3'- -GCGGUUUCGCGaUGGU--UUGGgCUgag -5'
24370 3' -53.3 NC_005264.1 + 96594 0.67 0.956882
Target:  5'- gGCCcuGGCaGagaUGCUAGGCCCGcaGCUCg -3'
miRNA:   3'- gCGGuuUCG-Cg--AUGGUUUGGGC--UGAG- -5'
24370 3' -53.3 NC_005264.1 + 66352 0.67 0.956882
Target:  5'- aGCUucgGAGGCGCUcuACgAGACguugguggCCGACUCg -3'
miRNA:   3'- gCGG---UUUCGCGA--UGgUUUG--------GGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 54115 0.67 0.954534
Target:  5'- aCGCCAccugaaauggaguuGGCGCUGCCcaccaCCGACg- -3'
miRNA:   3'- -GCGGUu-------------UCGCGAUGGuuug-GGCUGag -5'
24370 3' -53.3 NC_005264.1 + 28679 0.67 0.952922
Target:  5'- uGUCAuGGCGC-GCCGAGCUacaGAUUCu -3'
miRNA:   3'- gCGGUuUCGCGaUGGUUUGGg--CUGAG- -5'
24370 3' -53.3 NC_005264.1 + 69244 0.67 0.952922
Target:  5'- gCGCCAGAGCGUuuUugCAGGCacuuuUCGGCg- -3'
miRNA:   3'- -GCGGUUUCGCG--AugGUUUG-----GGCUGag -5'
24370 3' -53.3 NC_005264.1 + 100995 0.67 0.952922
Target:  5'- uCGCCAAcaacccguacgcGGCGCaggcgaGCCAGgcacuGCCCGGCg- -3'
miRNA:   3'- -GCGGUU------------UCGCGa-----UGGUU-----UGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 43899 0.67 0.952513
Target:  5'- gCGCCGGagacgauAGCGCgGCCGucGCCuCGACgUCg -3'
miRNA:   3'- -GCGGUU-------UCGCGaUGGUu-UGG-GCUG-AG- -5'
24370 3' -53.3 NC_005264.1 + 138343 0.67 0.948725
Target:  5'- gCGCgaCAAGGCGC--CCGAACgCGACUa -3'
miRNA:   3'- -GCG--GUUUCGCGauGGUUUGgGCUGAg -5'
24370 3' -53.3 NC_005264.1 + 97535 0.67 0.948292
Target:  5'- cCGCCAAGGU-UUGCCucaaaguGGACCCGGCg- -3'
miRNA:   3'- -GCGGUUUCGcGAUGG-------UUUGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 16272 0.67 0.944286
Target:  5'- uCGCCuGAGGCGCgGCCAGAaaCCGAUc- -3'
miRNA:   3'- -GCGG-UUUCGCGaUGGUUUg-GGCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.