miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 3' -53.3 NC_005264.1 + 129464 1.11 0.004131
Target:  5'- uCGCCAAAGCGCUACCAAACCCGACUCg -3'
miRNA:   3'- -GCGGUUUCGCGAUGGUUUGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 50455 0.79 0.375412
Target:  5'- cCGCCAAGGCGCUGCUcAACCUGGu-- -3'
miRNA:   3'- -GCGGUUUCGCGAUGGuUUGGGCUgag -5'
24370 3' -53.3 NC_005264.1 + 97800 0.77 0.474213
Target:  5'- gCGUaauGAGUagGCUGCCGAACCCGACUa -3'
miRNA:   3'- -GCGgu-UUCG--CGAUGGUUUGGGCUGAg -5'
24370 3' -53.3 NC_005264.1 + 39218 0.76 0.522238
Target:  5'- cCGCCGcGGCGCUGgCGGGgagggccugcguuCCCGGCUCg -3'
miRNA:   3'- -GCGGUuUCGCGAUgGUUU-------------GGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 158245 0.76 0.522238
Target:  5'- cCGCCGcGGCGCUGgCGGGgagggccugcguuCCCGGCUCg -3'
miRNA:   3'- -GCGGUuUCGCGAUgGUUU-------------GGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 17763 0.76 0.553573
Target:  5'- gCGgCAAGGagaGCUGCCcGGCCCGGCUUc -3'
miRNA:   3'- -GCgGUUUCg--CGAUGGuUUGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 122750 0.75 0.570997
Target:  5'- aCGCCAggaccgagucuacgAAGCGCUcggguACCAGGCCCGcgacCUCg -3'
miRNA:   3'- -GCGGU--------------UUCGCGA-----UGGUUUGGGCu---GAG- -5'
24370 3' -53.3 NC_005264.1 + 160143 0.75 0.578211
Target:  5'- uGCCAucuggcugcaagcaaGAGCccGCUugCGGACCCGACUa -3'
miRNA:   3'- gCGGU---------------UUCG--CGAugGUUUGGGCUGAg -5'
24370 3' -53.3 NC_005264.1 + 5248 0.74 0.640586
Target:  5'- aCGCCcugcugggcuacgggGAAGCGC--CCAAGCCCGGcCUCg -3'
miRNA:   3'- -GCGG---------------UUUCGCGauGGUUUGGGCU-GAG- -5'
24370 3' -53.3 NC_005264.1 + 162050 0.74 0.646839
Target:  5'- aGCCGuacugGAGCGCUACCGcaagaaCCGugUCg -3'
miRNA:   3'- gCGGU-----UUCGCGAUGGUuug---GGCugAG- -5'
24370 3' -53.3 NC_005264.1 + 120228 0.74 0.66764
Target:  5'- -aCCGAAGCGCcgggGCCGGuguaCCGACUCa -3'
miRNA:   3'- gcGGUUUCGCGa---UGGUUug--GGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 147328 0.73 0.688322
Target:  5'- uCGCCGcaagAAGCGCgUACCGGGCuuGuCUCu -3'
miRNA:   3'- -GCGGU----UUCGCG-AUGGUUUGggCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 80962 0.73 0.688322
Target:  5'- cCGCCAAGGCGCcaucgACCAauuucuuccucGACgCCGACg- -3'
miRNA:   3'- -GCGGUUUCGCGa----UGGU-----------UUG-GGCUGag -5'
24370 3' -53.3 NC_005264.1 + 33334 0.73 0.708811
Target:  5'- uCGCCuccGGCGCcGCCAAACCCuGCg- -3'
miRNA:   3'- -GCGGuu-UCGCGaUGGUUUGGGcUGag -5'
24370 3' -53.3 NC_005264.1 + 863 0.72 0.739012
Target:  5'- -uCCGAGGCGUUGCCGcGCCCgGACg- -3'
miRNA:   3'- gcGGUUUCGCGAUGGUuUGGG-CUGag -5'
24370 3' -53.3 NC_005264.1 + 119889 0.72 0.739012
Target:  5'- -uCCGAGGCGUUGCCGcGCCCgGACg- -3'
miRNA:   3'- gcGGUUUCGCGAUGGUuUGGG-CUGag -5'
24370 3' -53.3 NC_005264.1 + 128979 0.72 0.748899
Target:  5'- aCGCCGgcGAGgGaCUGCCGGACCCGuGCg- -3'
miRNA:   3'- -GCGGU--UUCgC-GAUGGUUUGGGC-UGag -5'
24370 3' -53.3 NC_005264.1 + 118249 0.72 0.748899
Target:  5'- uCGCCGGA--GCUGCCGAACUCGAacacCUCg -3'
miRNA:   3'- -GCGGUUUcgCGAUGGUUUGGGCU----GAG- -5'
24370 3' -53.3 NC_005264.1 + 33941 0.72 0.748899
Target:  5'- gGCCGuGGCGCgccgggACCGcGCCCGAUa- -3'
miRNA:   3'- gCGGUuUCGCGa-----UGGUuUGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 152968 0.72 0.748899
Target:  5'- gGCCGuGGCGCgccgggACCGcGCCCGAUa- -3'
miRNA:   3'- gCGGUuUCGCGa-----UGGUuUGGGCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.