miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 3' -53.3 NC_005264.1 + 133226 0.66 0.970437
Target:  5'- gCGCCGuAGaGCUuucgaaGCCAAGCgCCGACg- -3'
miRNA:   3'- -GCGGUuUCgCGA------UGGUUUG-GGCUGag -5'
24370 3' -53.3 NC_005264.1 + 66306 0.66 0.964106
Target:  5'- -uUCGAGGUcCUGCCAu-CCUGACUCa -3'
miRNA:   3'- gcGGUUUCGcGAUGGUuuGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 2990 0.66 0.970437
Target:  5'- -uCCAucGAGCGCcgACUggGCCggCGGCUCg -3'
miRNA:   3'- gcGGU--UUCGCGa-UGGuuUGG--GCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 42701 0.66 0.960608
Target:  5'- uCGCCGGccGGCGCU-CCGuccuCCUG-CUCg -3'
miRNA:   3'- -GCGGUU--UCGCGAuGGUuu--GGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 73150 0.66 0.963766
Target:  5'- uGCCAGcugguAGCGCUcaugcccACCGccAGCUCGuCUCa -3'
miRNA:   3'- gCGGUU-----UCGCGA-------UGGU--UUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 125841 0.66 0.975926
Target:  5'- gGUCAGGGUGUUGCCGGAggCGGCg- -3'
miRNA:   3'- gCGGUUUCGCGAUGGUUUggGCUGag -5'
24370 3' -53.3 NC_005264.1 + 134734 0.66 0.964106
Target:  5'- aGCCAcgauAGGCGCcggUGCgCAAuaacGCCUGACUUu -3'
miRNA:   3'- gCGGU----UUCGCG---AUG-GUU----UGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 50583 0.66 0.973283
Target:  5'- gCGCaCGcGGCGCUGagcAGCCCGGCg- -3'
miRNA:   3'- -GCG-GUuUCGCGAUgguUUGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 152307 0.66 0.96738
Target:  5'- gCGCCccuGAGgGCggcGCCGcacagGACCCG-CUCg -3'
miRNA:   3'- -GCGGu--UUCgCGa--UGGU-----UUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 12142 0.66 0.973283
Target:  5'- cCGCC--GGCGCUGCCcguuGCUgGGgUCu -3'
miRNA:   3'- -GCGGuuUCGCGAUGGuu--UGGgCUgAG- -5'
24370 3' -53.3 NC_005264.1 + 140683 0.66 0.973008
Target:  5'- cCGCCGcaaccuuAAGCaCUACCGaaGACCUcACUCa -3'
miRNA:   3'- -GCGGU-------UUCGcGAUGGU--UUGGGcUGAG- -5'
24370 3' -53.3 NC_005264.1 + 147557 0.66 0.975926
Target:  5'- uGCCGuuGCGCgugaaGCCGuagauGCCCGAaagCg -3'
miRNA:   3'- gCGGUuuCGCGa----UGGUu----UGGGCUga-G- -5'
24370 3' -53.3 NC_005264.1 + 16769 0.66 0.975926
Target:  5'- gCGCgGGGGCGCgcuguUCGGGCCgGACg- -3'
miRNA:   3'- -GCGgUUUCGCGau---GGUUUGGgCUGag -5'
24370 3' -53.3 NC_005264.1 + 120886 0.66 0.975926
Target:  5'- uGuCCAGGGUGaCUcaUGAACCUGACUCg -3'
miRNA:   3'- gC-GGUUUCGC-GAugGUUUGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 147247 0.66 0.964106
Target:  5'- uGCCGGAGcCGCaGCUgcGCCCGcaaGCUUg -3'
miRNA:   3'- gCGGUUUC-GCGaUGGuuUGGGC---UGAG- -5'
24370 3' -53.3 NC_005264.1 + 1169 0.66 0.975926
Target:  5'- uGCUAccGCGUUGuuAuuGCUCGACUCg -3'
miRNA:   3'- gCGGUuuCGCGAUggUu-UGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 2722 0.66 0.975926
Target:  5'- gGCCGcc-CGCgGCCGGGCCCGuCUUc -3'
miRNA:   3'- gCGGUuucGCGaUGGUUUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 69731 0.66 0.975926
Target:  5'- cCGCgGGAGCGCgggcACCGAACUu--CUCa -3'
miRNA:   3'- -GCGgUUUCGCGa---UGGUUUGGgcuGAG- -5'
24370 3' -53.3 NC_005264.1 + 46623 0.66 0.975926
Target:  5'- uCGUgGGAcCGCgugGCCGAAgaauucggcaucCCCGACUCg -3'
miRNA:   3'- -GCGgUUUcGCGa--UGGUUU------------GGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 63404 0.66 0.975926
Target:  5'- gCGCCGGAGa--UGCCAAagcaaaccGCCCGAUg- -3'
miRNA:   3'- -GCGGUUUCgcgAUGGUU--------UGGGCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.