miRNA display CGI


Results 1 - 20 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 3' -53.3 NC_005264.1 + 189 0.71 0.814587
Target:  5'- uCGCCGgcGCGCUuCCGAGCCuCGAa-- -3'
miRNA:   3'- -GCGGUuuCGCGAuGGUUUGG-GCUgag -5'
24370 3' -53.3 NC_005264.1 + 245 0.68 0.934676
Target:  5'- gCGCCAcAGCGaggcggGCCGcucgacauccagAACCCGACa- -3'
miRNA:   3'- -GCGGUuUCGCga----UGGU------------UUGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 863 0.72 0.739012
Target:  5'- -uCCGAGGCGUUGCCGcGCCCgGACg- -3'
miRNA:   3'- gcGGUUUCGCGAUGGUuUGGG-CUGag -5'
24370 3' -53.3 NC_005264.1 + 1169 0.66 0.975926
Target:  5'- uGCUAccGCGUUGuuAuuGCUCGACUCg -3'
miRNA:   3'- gCGGUuuCGCGAUggUu-UGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 1860 0.66 0.975926
Target:  5'- uGuCCAGGGUGaCUcaUGAACCUGACUCg -3'
miRNA:   3'- gC-GGUUUCGC-GAugGUUUGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 2722 0.66 0.975926
Target:  5'- gGCCGcc-CGCgGCCGGGCCCGuCUUc -3'
miRNA:   3'- gCGGUuucGCGaUGGUUUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 2990 0.66 0.970437
Target:  5'- -uCCAucGAGCGCcgACUggGCCggCGGCUCg -3'
miRNA:   3'- gcGGU--UUCGCGa-UGGuuUGG--GCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 3762 0.71 0.823356
Target:  5'- cCGCCGGGGCGCUG-CGGGCCCu---- -3'
miRNA:   3'- -GCGGUUUCGCGAUgGUUUGGGcugag -5'
24370 3' -53.3 NC_005264.1 + 4786 0.7 0.848547
Target:  5'- gCGCCGuucGCGC-ACCuccaCCGACUCa -3'
miRNA:   3'- -GCGGUuu-CGCGaUGGuuugGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 5248 0.74 0.640586
Target:  5'- aCGCCcugcugggcuacgggGAAGCGC--CCAAGCCCGGcCUCg -3'
miRNA:   3'- -GCGG---------------UUUCGCGauGGUUUGGGCU-GAG- -5'
24370 3' -53.3 NC_005264.1 + 5608 0.68 0.929501
Target:  5'- gCGaCCGGAGcCGCUAUCGGGCCgcgCGACg- -3'
miRNA:   3'- -GC-GGUUUC-GCGAUGGUUUGG---GCUGag -5'
24370 3' -53.3 NC_005264.1 + 5907 0.68 0.936677
Target:  5'- aCGCCucggcggagacucgcGAGGCGCUAUCuAACCaCGGCcCg -3'
miRNA:   3'- -GCGG---------------UUUCGCGAUGGuUUGG-GCUGaG- -5'
24370 3' -53.3 NC_005264.1 + 6815 0.66 0.975926
Target:  5'- gGUCAGGGUGUUGCCGGAggCGGCg- -3'
miRNA:   3'- gCGGUUUCGCGAUGGUUUggGCUGag -5'
24370 3' -53.3 NC_005264.1 + 6903 0.67 0.956882
Target:  5'- uGCCuuGGCuGCUGCCGuugcgcgaaaGACUcgaaCGGCUCg -3'
miRNA:   3'- gCGGuuUCG-CGAUGGU----------UUGG----GCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 7118 0.68 0.929501
Target:  5'- gCGCCGuuAGCGCcgGCCGacuGAgCCGACg- -3'
miRNA:   3'- -GCGGUu-UCGCGa-UGGU---UUgGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 8963 0.68 0.918405
Target:  5'- gGCCAAcuCGCUgcagcACCAAACCgCGAgaaCUCg -3'
miRNA:   3'- gCGGUUucGCGA-----UGGUUUGG-GCU---GAG- -5'
24370 3' -53.3 NC_005264.1 + 9053 0.67 0.939604
Target:  5'- aGCCu-AGCGUUGa-GGACCCGACg- -3'
miRNA:   3'- gCGGuuUCGCGAUggUUUGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 9953 0.7 0.831944
Target:  5'- aCGCCGgcGAGgGaCUGCCGGACCCGuggGCg- -3'
miRNA:   3'- -GCGGU--UUCgC-GAUGGUUUGGGC---UGag -5'
24370 3' -53.3 NC_005264.1 + 12142 0.66 0.973283
Target:  5'- cCGCC--GGCGCUGCCcguuGCUgGGgUCu -3'
miRNA:   3'- -GCGGuuUCGCGAUGGuu--UGGgCUgAG- -5'
24370 3' -53.3 NC_005264.1 + 16272 0.67 0.944286
Target:  5'- uCGCCuGAGGCGCgGCCAGAaaCCGAUc- -3'
miRNA:   3'- -GCGG-UUUCGCGaUGGUUUg-GGCUGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.