miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 3' -53.3 NC_005264.1 + 162050 0.74 0.646839
Target:  5'- aGCCGuacugGAGCGCUACCGcaagaaCCGugUCg -3'
miRNA:   3'- gCGGU-----UUCGCGAUGGUuug---GGCugAG- -5'
24370 3' -53.3 NC_005264.1 + 161387 0.7 0.856547
Target:  5'- cCGCC--GGCGaugGCCGGugCUGGCUCc -3'
miRNA:   3'- -GCGGuuUCGCga-UGGUUugGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 160200 0.66 0.973283
Target:  5'- cCGCugCAGAGCGCaACCu-GCCCG-CUg -3'
miRNA:   3'- -GCG--GUUUCGCGaUGGuuUGGGCuGAg -5'
24370 3' -53.3 NC_005264.1 + 160143 0.75 0.578211
Target:  5'- uGCCAucuggcugcaagcaaGAGCccGCUugCGGACCCGACUa -3'
miRNA:   3'- gCGGU---------------UUCG--CGAugGUUUGGGCUGAg -5'
24370 3' -53.3 NC_005264.1 + 159917 0.66 0.960608
Target:  5'- aCGCUGGAGCucGCaGCCAAGCgUGACa- -3'
miRNA:   3'- -GCGGUUUCG--CGaUGGUUUGgGCUGag -5'
24370 3' -53.3 NC_005264.1 + 158813 0.66 0.970437
Target:  5'- uCGCCGAGGCcUUGCC---CCCG-CUCu -3'
miRNA:   3'- -GCGGUUUCGcGAUGGuuuGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 158245 0.76 0.522238
Target:  5'- cCGCCGcGGCGCUGgCGGGgagggccugcguuCCCGGCUCg -3'
miRNA:   3'- -GCGGUuUCGCGAUgGUUU-------------GGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 158081 0.69 0.890536
Target:  5'- gGCCGAGuucGCGCggcgguccacccCCGGACgCCGGCUCg -3'
miRNA:   3'- gCGGUUU---CGCGau----------GGUUUG-GGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 156946 0.72 0.777882
Target:  5'- cCGCCGAGGCGUacuaccucaacUACUGGACCaCG-CUCg -3'
miRNA:   3'- -GCGGUUUCGCG-----------AUGGUUUGG-GCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 154722 0.69 0.906321
Target:  5'- gGCUAAAGCGCaggaucgGCCGGuACCUGugUa -3'
miRNA:   3'- gCGGUUUCGCGa------UGGUU-UGGGCugAg -5'
24370 3' -53.3 NC_005264.1 + 153252 0.68 0.929501
Target:  5'- uCGCCuguacuuuGAGCGauagaCGAACCCGGCUUc -3'
miRNA:   3'- -GCGGu-------UUCGCgaug-GUUUGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 153156 0.68 0.934676
Target:  5'- gCGUCGAGGCGC----GAGCCCGcCUCc -3'
miRNA:   3'- -GCGGUUUCGCGauggUUUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 152968 0.72 0.748899
Target:  5'- gGCCGuGGCGCgccgggACCGcGCCCGAUa- -3'
miRNA:   3'- gCGGUuUCGCGa-----UGGUuUGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 152307 0.66 0.96738
Target:  5'- gCGCCccuGAGgGCggcGCCGcacagGACCCG-CUCg -3'
miRNA:   3'- -GCGGu--UUCgCGa--UGGU-----UUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 149577 0.66 0.970437
Target:  5'- aGCCccgggcggaGGGGgGCUGCuCGAugCCGAgUCu -3'
miRNA:   3'- gCGG---------UUUCgCGAUG-GUUugGGCUgAG- -5'
24370 3' -53.3 NC_005264.1 + 147557 0.66 0.975926
Target:  5'- uGCCGuuGCGCgugaaGCCGuagauGCCCGAaagCg -3'
miRNA:   3'- gCGGUuuCGCGa----UGGUu----UGGGCUga-G- -5'
24370 3' -53.3 NC_005264.1 + 147328 0.73 0.688322
Target:  5'- uCGCCGcaagAAGCGCgUACCGGGCuuGuCUCu -3'
miRNA:   3'- -GCGGU----UUCGCG-AUGGUUUGggCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 147247 0.66 0.964106
Target:  5'- uGCCGGAGcCGCaGCUgcGCCCGcaaGCUUg -3'
miRNA:   3'- gCGGUUUC-GCGaUGGuuUGGGC---UGAG- -5'
24370 3' -53.3 NC_005264.1 + 146722 0.66 0.964106
Target:  5'- uGCCugauGAGCGggGCagaaaGAACCCGGC-Cg -3'
miRNA:   3'- gCGGu---UUCGCgaUGg----UUUGGGCUGaG- -5'
24370 3' -53.3 NC_005264.1 + 146310 0.66 0.960608
Target:  5'- aCGCgcAAGCGCUaagaGCUAu-CCUGACUCu -3'
miRNA:   3'- -GCGguUUCGCGA----UGGUuuGGGCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.