miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 3' -53.3 NC_005264.1 + 99040 0.7 0.848547
Target:  5'- aGCgCAAAGCGggGCCuccCCCGAgUCg -3'
miRNA:   3'- gCG-GUUUCGCgaUGGuuuGGGCUgAG- -5'
24370 3' -53.3 NC_005264.1 + 102309 0.72 0.768344
Target:  5'- uGCCAGAGCGCaaugGCU--GCgCCGAUUCc -3'
miRNA:   3'- gCGGUUUCGCGa---UGGuuUG-GGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 49898 0.71 0.787285
Target:  5'- uGCCAAAGCGUUGcgcgcCCAAAUCCcGCUg -3'
miRNA:   3'- gCGGUUUCGCGAU-----GGUUUGGGcUGAg -5'
24370 3' -53.3 NC_005264.1 + 68027 0.71 0.796543
Target:  5'- gCGCCAAAGagcggauaacCGCUuCCGuGCCCGACg- -3'
miRNA:   3'- -GCGGUUUC----------GCGAuGGUuUGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 70320 0.71 0.805646
Target:  5'- cCGCCGgcGCGCUgACCGAGUCCGucaACUCc -3'
miRNA:   3'- -GCGGUuuCGCGA-UGGUUUGGGC---UGAG- -5'
24370 3' -53.3 NC_005264.1 + 21061 0.71 0.814587
Target:  5'- gGCCuuAGCGCguugGCCAAGCCauaugccguGCUCg -3'
miRNA:   3'- gCGGuuUCGCGa---UGGUUUGGgc-------UGAG- -5'
24370 3' -53.3 NC_005264.1 + 119216 0.71 0.814587
Target:  5'- uCGCCGgcGCGCUuCCGAGCCuCGAa-- -3'
miRNA:   3'- -GCGGUuuCGCGAuGGUUUGG-GCUgag -5'
24370 3' -53.3 NC_005264.1 + 122788 0.71 0.823356
Target:  5'- cCGCCGGGGCGCUG-CGGGCCCu---- -3'
miRNA:   3'- -GCGGUUUCGCGAUgGUUUGGGcugag -5'
24370 3' -53.3 NC_005264.1 + 17676 0.7 0.831944
Target:  5'- aGCCucAGGCGCaGCCGAGgCCGcggcgGCUCg -3'
miRNA:   3'- gCGGu-UUCGCGaUGGUUUgGGC-----UGAG- -5'
24370 3' -53.3 NC_005264.1 + 76275 0.72 0.768344
Target:  5'- uCGCCAGAGUGCgc----ACCCGACUg -3'
miRNA:   3'- -GCGGUUUCGCGaugguuUGGGCUGAg -5'
24370 3' -53.3 NC_005264.1 + 152968 0.72 0.748899
Target:  5'- gGCCGuGGCGCgccgggACCGcGCCCGAUa- -3'
miRNA:   3'- gCGGUuUCGCGa-----UGGUuUGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 128979 0.72 0.748899
Target:  5'- aCGCCGgcGAGgGaCUGCCGGACCCGuGCg- -3'
miRNA:   3'- -GCGGU--UUCgC-GAUGGUUUGGGC-UGag -5'
24370 3' -53.3 NC_005264.1 + 158245 0.76 0.522238
Target:  5'- cCGCCGcGGCGCUGgCGGGgagggccugcguuCCCGGCUCg -3'
miRNA:   3'- -GCGGUuUCGCGAUgGUUU-------------GGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 17763 0.76 0.553573
Target:  5'- gCGgCAAGGagaGCUGCCcGGCCCGGCUUc -3'
miRNA:   3'- -GCgGUUUCg--CGAUGGuUUGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 5248 0.74 0.640586
Target:  5'- aCGCCcugcugggcuacgggGAAGCGC--CCAAGCCCGGcCUCg -3'
miRNA:   3'- -GCGG---------------UUUCGCGauGGUUUGGGCU-GAG- -5'
24370 3' -53.3 NC_005264.1 + 80962 0.73 0.688322
Target:  5'- cCGCCAAGGCGCcaucgACCAauuucuuccucGACgCCGACg- -3'
miRNA:   3'- -GCGGUUUCGCGa----UGGU-----------UUG-GGCUGag -5'
24370 3' -53.3 NC_005264.1 + 147328 0.73 0.688322
Target:  5'- uCGCCGcaagAAGCGCgUACCGGGCuuGuCUCu -3'
miRNA:   3'- -GCGGU----UUCGCG-AUGGUUUGggCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 33334 0.73 0.708811
Target:  5'- uCGCCuccGGCGCcGCCAAACCCuGCg- -3'
miRNA:   3'- -GCGGuu-UCGCGaUGGUUUGGGcUGag -5'
24370 3' -53.3 NC_005264.1 + 119889 0.72 0.739012
Target:  5'- -uCCGAGGCGUUGCCGcGCCCgGACg- -3'
miRNA:   3'- gcGGUUUCGCGAUGGUuUGGG-CUGag -5'
24370 3' -53.3 NC_005264.1 + 118249 0.72 0.748899
Target:  5'- uCGCCGGA--GCUGCCGAACUCGAacacCUCg -3'
miRNA:   3'- -GCGGUUUcgCGAUGGUUUGGGCU----GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.