miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 3' -53.3 NC_005264.1 + 147557 0.66 0.975926
Target:  5'- uGCCGuuGCGCgugaaGCCGuagauGCCCGAaagCg -3'
miRNA:   3'- gCGGUuuCGCGa----UGGUu----UGGGCUga-G- -5'
24370 3' -53.3 NC_005264.1 + 62395 0.66 0.96738
Target:  5'- -uCCGGAGCGCagaguaauucUGuuGGGCCCGGCUUc -3'
miRNA:   3'- gcGGUUUCGCG----------AUggUUUGGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 139940 0.66 0.964106
Target:  5'- aCGaCCGAcgcGGUGCUGCUAucguGCCCGAa-- -3'
miRNA:   3'- -GC-GGUU---UCGCGAUGGUu---UGGGCUgag -5'
24370 3' -53.3 NC_005264.1 + 97800 0.77 0.474213
Target:  5'- gCGUaauGAGUagGCUGCCGAACCCGACUa -3'
miRNA:   3'- -GCGgu-UUCG--CGAUGGUUUGGGCUGAg -5'
24370 3' -53.3 NC_005264.1 + 86850 0.66 0.975926
Target:  5'- aCGCCGAuuauGCGgagGCUAGACCCuGGCa- -3'
miRNA:   3'- -GCGGUUu---CGCga-UGGUUUGGG-CUGag -5'
24370 3' -53.3 NC_005264.1 + 27657 0.66 0.975926
Target:  5'- gGCCAcgcGGCGCUcggACCGAgguACgCGGCUg -3'
miRNA:   3'- gCGGUu--UCGCGA---UGGUU---UGgGCUGAg -5'
24370 3' -53.3 NC_005264.1 + 6815 0.66 0.975926
Target:  5'- gGUCAGGGUGUUGCCGGAggCGGCg- -3'
miRNA:   3'- gCGGUUUCGCGAUGGUUUggGCUGag -5'
24370 3' -53.3 NC_005264.1 + 107942 0.66 0.973283
Target:  5'- cCGCCGAcGCGCUuacCCAgaguGACuuGGCa- -3'
miRNA:   3'- -GCGGUUuCGCGAu--GGU----UUGggCUGag -5'
24370 3' -53.3 NC_005264.1 + 158813 0.66 0.970437
Target:  5'- uCGCCGAGGCcUUGCC---CCCG-CUCu -3'
miRNA:   3'- -GCGGUUUCGcGAUGGuuuGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 144673 0.66 0.96738
Target:  5'- gCGCC-GAGCGUcaGCCGAcaaGCCUGuCUCu -3'
miRNA:   3'- -GCGGuUUCGCGa-UGGUU---UGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 99803 0.66 0.970437
Target:  5'- gGCCGAGGCGauggucGCCGAcCCCGGg-- -3'
miRNA:   3'- gCGGUUUCGCga----UGGUUuGGGCUgag -5'
24370 3' -53.3 NC_005264.1 + 53661 0.66 0.973283
Target:  5'- uGCCAgaGAGCGUUACUAugaacaaggugGACCUGAg-- -3'
miRNA:   3'- gCGGU--UUCGCGAUGGU-----------UUGGGCUgag -5'
24370 3' -53.3 NC_005264.1 + 46623 0.66 0.975926
Target:  5'- uCGUgGGAcCGCgugGCCGAAgaauucggcaucCCCGACUCg -3'
miRNA:   3'- -GCGgUUUcGCGa--UGGUUU------------GGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 54537 0.66 0.970437
Target:  5'- uGCCAGuAGUGUUcGCCG---CCGACUCg -3'
miRNA:   3'- gCGGUU-UCGCGA-UGGUuugGGCUGAG- -5'
24370 3' -53.3 NC_005264.1 + 2722 0.66 0.975926
Target:  5'- gGCCGcc-CGCgGCCGGGCCCGuCUUc -3'
miRNA:   3'- gCGGUuucGCGaUGGUUUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 160200 0.66 0.973283
Target:  5'- cCGCugCAGAGCGCaACCu-GCCCG-CUg -3'
miRNA:   3'- -GCG--GUUUCGCGaUGGuuUGGGCuGAg -5'
24370 3' -53.3 NC_005264.1 + 117940 0.66 0.970141
Target:  5'- uGCUcAAGCGCUAUCAcgagaugauauuuGGCCCGGa-- -3'
miRNA:   3'- gCGGuUUCGCGAUGGU-------------UUGGGCUgag -5'
24370 3' -53.3 NC_005264.1 + 33280 0.66 0.96738
Target:  5'- gCGCCccuGAGgGCggcGCCGcacagGACCCG-CUCg -3'
miRNA:   3'- -GCGGu--UUCgCGa--UGGU-----UUGGGCuGAG- -5'
24370 3' -53.3 NC_005264.1 + 110885 0.66 0.975926
Target:  5'- gCGCCGAcacgacGCGUUagcggcacccucGCCAAGCUCGGCg- -3'
miRNA:   3'- -GCGGUUu-----CGCGA------------UGGUUUGGGCUGag -5'
24370 3' -53.3 NC_005264.1 + 1860 0.66 0.975926
Target:  5'- uGuCCAGGGUGaCUcaUGAACCUGACUCg -3'
miRNA:   3'- gC-GGUUUCGC-GAugGUUUGGGCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.