miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 5' -62.8 NC_005264.1 + 129500 1.08 0.00086
Target:  5'- gCGGCGCAGGGUUUGGCGGCGCCGGAGg -3'
miRNA:   3'- -GCCGCGUCCCAAACCGCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 6987 0.81 0.080907
Target:  5'- uGGCGCGGGGUUgucccugcgGGCGGCGCCaacgugaaaguuauuGGGGu -3'
miRNA:   3'- gCCGCGUCCCAAa--------CCGCCGCGG---------------CCUC- -5'
24370 5' -62.8 NC_005264.1 + 82389 0.74 0.233971
Target:  5'- gGGCGCAGGGcuagacgUUUGGauGC-CCGGAGa -3'
miRNA:   3'- gCCGCGUCCC-------AAACCgcCGcGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 155268 0.74 0.245542
Target:  5'- gCGGCGCGGGGUa-GGCGGCGg-GGAc -3'
miRNA:   3'- -GCCGCGUCCCAaaCCGCCGCggCCUc -5'
24370 5' -62.8 NC_005264.1 + 156165 0.73 0.256416
Target:  5'- gGGCGCAuaugcgcggcuuuGcGGcgUGGCGGCGCCGGc- -3'
miRNA:   3'- gCCGCGU-------------C-CCaaACCGCCGCGGCCuc -5'
24370 5' -62.8 NC_005264.1 + 16560 0.73 0.256999
Target:  5'- -aGCGCGGug---GGCGGCGCCGGGGc -3'
miRNA:   3'- gcCGCGUCccaaaCCGCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 43665 0.72 0.287553
Target:  5'- uCGGCGCGcugcgcgccGGcGUUaaGGCGGcCGCCGGGGa -3'
miRNA:   3'- -GCCGCGU---------CC-CAAa-CCGCC-GCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 162691 0.72 0.287553
Target:  5'- uCGGCGCGcugcgcgccGGcGUUaaGGCGGcCGCCGGGGa -3'
miRNA:   3'- -GCCGCGU---------CC-CAAa-CCGCC-GCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 19425 0.72 0.320894
Target:  5'- aGGCGCcGGGUgUGGCcgcggGGCGCgGGuGg -3'
miRNA:   3'- gCCGCGuCCCAaACCG-----CCGCGgCCuC- -5'
24370 5' -62.8 NC_005264.1 + 154807 0.71 0.342248
Target:  5'- aGGCGgAGGGcgcGGUGGCGCCGu-- -3'
miRNA:   3'- gCCGCgUCCCaaaCCGCCGCGGCcuc -5'
24370 5' -62.8 NC_005264.1 + 35781 0.71 0.342248
Target:  5'- aGGCGgAGGGcgcGGUGGCGCCGu-- -3'
miRNA:   3'- gCCGCgUCCCaaaCCGCCGCGGCcuc -5'
24370 5' -62.8 NC_005264.1 + 43881 0.71 0.349591
Target:  5'- aCGaGCGCGGcaaa-GGgGGCGCCGGAGa -3'
miRNA:   3'- -GC-CGCGUCccaaaCCgCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 48376 0.71 0.36461
Target:  5'- gGGCGCAgccgguagacuGGGgcgucgGGCGGCgGCCaGGAGc -3'
miRNA:   3'- gCCGCGU-----------CCCaaa---CCGCCG-CGG-CCUC- -5'
24370 5' -62.8 NC_005264.1 + 94601 0.7 0.380069
Target:  5'- gCGGCGCGGGcauggcUUGGCGGUGCggcgUGGAc -3'
miRNA:   3'- -GCCGCGUCCca----AACCGCCGCG----GCCUc -5'
24370 5' -62.8 NC_005264.1 + 66690 0.7 0.387962
Target:  5'- cCGGCGCcGGGcg-GGgGGCguacuacgugucGCCGGGGa -3'
miRNA:   3'- -GCCGCGuCCCaaaCCgCCG------------CGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 87653 0.69 0.437508
Target:  5'- gGGCGCGGGaccUGGCGGCaaCGGGc -3'
miRNA:   3'- gCCGCGUCCcaaACCGCCGcgGCCUc -5'
24370 5' -62.8 NC_005264.1 + 3622 0.69 0.445249
Target:  5'- gGGCGCugugggcggggugGGGGUUUcugggaGGCGGUuugaGCUGGGGg -3'
miRNA:   3'- gCCGCG-------------UCCCAAA------CCGCCG----CGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 120051 0.69 0.454814
Target:  5'- gGGUcuaGCGGGGgggaaguaggUGGCGGaCGCCGGc- -3'
miRNA:   3'- gCCG---CGUCCCaa--------ACCGCC-GCGGCCuc -5'
24370 5' -62.8 NC_005264.1 + 75706 0.69 0.463604
Target:  5'- uCGGCGCGaagacuGGUgcgccccGCgGGCGCCGGAGg -3'
miRNA:   3'- -GCCGCGUc-----CCAaac----CG-CCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 37982 0.69 0.471591
Target:  5'- gCGGC-CAGGcGagUGGCGGCcaccgccGCCGGAc -3'
miRNA:   3'- -GCCGcGUCC-CaaACCGCCG-------CGGCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.