miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 5' -62.8 NC_005264.1 + 28339 0.66 0.642803
Target:  5'- gCGGCGUAcGGGUagcgGGCGacacGCGCaauuGGAGu -3'
miRNA:   3'- -GCCGCGU-CCCAaa--CCGC----CGCGg---CCUC- -5'
24370 5' -62.8 NC_005264.1 + 54211 0.67 0.565333
Target:  5'- -uGCGCGGGGgauacGGaCGGCGgCCGGuGc -3'
miRNA:   3'- gcCGCGUCCCaaa--CC-GCCGC-GGCCuC- -5'
24370 5' -62.8 NC_005264.1 + 126898 0.67 0.565333
Target:  5'- gCGGCGUcGGcGccccagauGCGGCGUCGGAGg -3'
miRNA:   3'- -GCCGCGuCC-Caaac----CGCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 158428 0.67 0.583599
Target:  5'- uCGGCGaAGGGggcacuGCGcugcucaGCGCCGGAGa -3'
miRNA:   3'- -GCCGCgUCCCaaac--CGC-------CGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 32921 0.67 0.584564
Target:  5'- -cGCGCAGGGgucgcGG-GGCGCCGcguGAGu -3'
miRNA:   3'- gcCGCGUCCCaaa--CCgCCGCGGC---CUC- -5'
24370 5' -62.8 NC_005264.1 + 19887 0.66 0.603918
Target:  5'- gCGGcCGCGcuagccauuucGGGUgcuuugUGGUGGCGCCGu-- -3'
miRNA:   3'- -GCC-GCGU-----------CCCAa-----ACCGCCGCGGCcuc -5'
24370 5' -62.8 NC_005264.1 + 115948 0.66 0.614599
Target:  5'- gCGGCGCAGGcuaggagguacGCGGCGCCcGAc -3'
miRNA:   3'- -GCCGCGUCCcaaac------CGCCGCGGcCUc -5'
24370 5' -62.8 NC_005264.1 + 25714 0.66 0.623349
Target:  5'- uGGCGCGGGcGgca-GCGGUGCguacucggucgCGGAGa -3'
miRNA:   3'- gCCGCGUCC-CaaacCGCCGCG-----------GCCUC- -5'
24370 5' -62.8 NC_005264.1 + 34909 0.66 0.64183
Target:  5'- aGG-GCAGGGUUacUGGCccaguGCGCCcgccucaGGAGa -3'
miRNA:   3'- gCCgCGUCCCAA--ACCGc----CGCGG-------CCUC- -5'
24370 5' -62.8 NC_005264.1 + 121918 0.67 0.546271
Target:  5'- gCGGCGCGGcGGggagGGCgacGGCGagagcgaCGGAGu -3'
miRNA:   3'- -GCCGCGUC-CCaaa-CCG---CCGCg------GCCUC- -5'
24370 5' -62.8 NC_005264.1 + 20247 0.67 0.535874
Target:  5'- gGGUggGCAGGGguu-GCGGCGCggccucgCGGAGg -3'
miRNA:   3'- gCCG--CGUCCCaaacCGCCGCG-------GCCUC- -5'
24370 5' -62.8 NC_005264.1 + 162235 0.68 0.531171
Target:  5'- cCGGCGgGGGGggggggggcuacGGCGGgGCUGGcGGg -3'
miRNA:   3'- -GCCGCgUCCCaaa---------CCGCCgCGGCC-UC- -5'
24370 5' -62.8 NC_005264.1 + 16560 0.73 0.256999
Target:  5'- -aGCGCGGug---GGCGGCGCCGGGGc -3'
miRNA:   3'- gcCGCGUCccaaaCCGCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 162691 0.72 0.287553
Target:  5'- uCGGCGCGcugcgcgccGGcGUUaaGGCGGcCGCCGGGGa -3'
miRNA:   3'- -GCCGCGU---------CC-CAAa-CCGCC-GCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 19425 0.72 0.320894
Target:  5'- aGGCGCcGGGUgUGGCcgcggGGCGCgGGuGg -3'
miRNA:   3'- gCCGCGuCCCAaACCG-----CCGCGgCCuC- -5'
24370 5' -62.8 NC_005264.1 + 154807 0.71 0.342248
Target:  5'- aGGCGgAGGGcgcGGUGGCGCCGu-- -3'
miRNA:   3'- gCCGCgUCCCaaaCCGCCGCGGCcuc -5'
24370 5' -62.8 NC_005264.1 + 3622 0.69 0.445249
Target:  5'- gGGCGCugugggcggggugGGGGUUUcugggaGGCGGUuugaGCUGGGGg -3'
miRNA:   3'- gCCGCG-------------UCCCAAA------CCGCCG----CGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 75706 0.69 0.463604
Target:  5'- uCGGCGCGaagacuGGUgcgccccGCgGGCGCCGGAGg -3'
miRNA:   3'- -GCCGCGUc-----CCAaac----CG-CCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 157009 0.69 0.471591
Target:  5'- gCGGC-CAGGcGagUGGCGGCcaccgccGCCGGAc -3'
miRNA:   3'- -GCCGcGUCC-CaaACCGCCG-------CGGCCUc -5'
24370 5' -62.8 NC_005264.1 + 116527 0.68 0.527419
Target:  5'- gCGGUcuucgGUGGGGUcgUUGGgGGCuaCGGAGg -3'
miRNA:   3'- -GCCG-----CGUCCCA--AACCgCCGcgGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.