miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 5' -62.8 NC_005264.1 + 109088 0.66 0.652522
Target:  5'- uGGCGaAGacga-GGaCGGCGCCGGAGa -3'
miRNA:   3'- gCCGCgUCccaaaCC-GCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 87653 0.69 0.437508
Target:  5'- gGGCGCGGGaccUGGCGGCaaCGGGc -3'
miRNA:   3'- gCCGCGUCCcaaACCGCCGcgGCCUc -5'
24370 5' -62.8 NC_005264.1 + 66690 0.7 0.387962
Target:  5'- cCGGCGCcGGGcg-GGgGGCguacuacgugucGCCGGGGa -3'
miRNA:   3'- -GCCGCGuCCCaaaCCgCCG------------CGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 129500 1.08 0.00086
Target:  5'- gCGGCGCAGGGUUUGGCGGCGCCGGAGg -3'
miRNA:   3'- -GCCGCGUCCCAAACCGCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 146945 0.66 0.642803
Target:  5'- uGGCGCAGaGGc-UGGaUGGCGCU-GAGg -3'
miRNA:   3'- gCCGCGUC-CCaaACC-GCCGCGGcCUC- -5'
24370 5' -62.8 NC_005264.1 + 109350 0.66 0.633076
Target:  5'- cCGGCGCAuGGGgcuucuaUGGUGGgggaguucggcCGUCGGAa -3'
miRNA:   3'- -GCCGCGU-CCCaa-----ACCGCC-----------GCGGCCUc -5'
24370 5' -62.8 NC_005264.1 + 155428 0.66 0.611684
Target:  5'- cCGGCGCAcgaaccaaUGGacgaCGGCGCCGGGGc -3'
miRNA:   3'- -GCCGCGUcccaa---ACC----GCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 25212 0.66 0.603918
Target:  5'- uGGCGCAcacGGUggccagGGCaGUGCCGGcAGa -3'
miRNA:   3'- gCCGCGUc--CCAaa----CCGcCGCGGCC-UC- -5'
24370 5' -62.8 NC_005264.1 + 39401 0.67 0.583599
Target:  5'- uCGGCGaAGGGggcacuGCGcugcucaGCGCCGGAGa -3'
miRNA:   3'- -GCCGCgUCCCaaac--CGC-------CGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 37982 0.69 0.471591
Target:  5'- gCGGC-CAGGcGagUGGCGGCcaccgccGCCGGAc -3'
miRNA:   3'- -GCCGcGUCC-CaaACCGCCG-------CGGCCUc -5'
24370 5' -62.8 NC_005264.1 + 2892 0.67 0.546271
Target:  5'- gCGGCGCGGcGGggagGGCgacGGCGagagcgaCGGAGu -3'
miRNA:   3'- -GCCGCGUC-CCaaa-CCG---CCGCg------GCCUC- -5'
24370 5' -62.8 NC_005264.1 + 109637 0.67 0.584564
Target:  5'- gGGCGCGacGGUUgcaacucGCGGCcCCGGAGa -3'
miRNA:   3'- gCCGCGUc-CCAAac-----CGCCGcGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 91496 0.66 0.652522
Target:  5'- -cGCuGCGGGGUUUcGGCGGCGUa-GAa -3'
miRNA:   3'- gcCG-CGUCCCAAA-CCGCCGCGgcCUc -5'
24370 5' -62.8 NC_005264.1 + 43208 0.68 0.531171
Target:  5'- cCGGCGgGGGGggggggggcuacGGCGGgGCUGGcGGg -3'
miRNA:   3'- -GCCGCgUCCCaaa---------CCGCCgCGGCC-UC- -5'
24370 5' -62.8 NC_005264.1 + 45392 0.66 0.652522
Target:  5'- aGGCGCGGcaaacgauGGag-GGCGGCGCCc--- -3'
miRNA:   3'- gCCGCGUC--------CCaaaCCGCCGCGGccuc -5'
24370 5' -62.8 NC_005264.1 + 67634 0.67 0.594229
Target:  5'- gGGCGCAGGGguguccUGcGCGGC-CCGu-- -3'
miRNA:   3'- gCCGCGUCCCaa----AC-CGCCGcGGCcuc -5'
24370 5' -62.8 NC_005264.1 + 21323 0.68 0.508815
Target:  5'- gGGUGCAGuug-UGGCGcccguagauGCGCCGGGGc -3'
miRNA:   3'- gCCGCGUCccaaACCGC---------CGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 120051 0.69 0.454814
Target:  5'- gGGUcuaGCGGGGgggaaguaggUGGCGGaCGCCGGc- -3'
miRNA:   3'- gCCG---CGUCCCaa--------ACCGCC-GCGGCCuc -5'
24370 5' -62.8 NC_005264.1 + 5954 0.66 0.642803
Target:  5'- -cGCGCAGGGca--GCGGCGCauucgCGGAu -3'
miRNA:   3'- gcCGCGUCCCaaacCGCCGCG-----GCCUc -5'
24370 5' -62.8 NC_005264.1 + 101930 0.66 0.623349
Target:  5'- uGGCGCGcgaaacUGGCGGCGUCGGc- -3'
miRNA:   3'- gCCGCGUcccaa-ACCGCCGCGGCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.