miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24370 5' -62.8 NC_005264.1 + 39401 0.67 0.583599
Target:  5'- uCGGCGaAGGGggcacuGCGcugcucaGCGCCGGAGa -3'
miRNA:   3'- -GCCGCgUCCCaaac--CGC-------CGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 158428 0.67 0.583599
Target:  5'- uCGGCGaAGGGggcacuGCGcugcucaGCGCCGGAGa -3'
miRNA:   3'- -GCCGCgUCCCaaac--CGC-------CGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 126898 0.67 0.565333
Target:  5'- gCGGCGUcGGcGccccagauGCGGCGUCGGAGg -3'
miRNA:   3'- -GCCGCGuCC-Caaac----CGCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 54211 0.67 0.565333
Target:  5'- -uGCGCGGGGgauacGGaCGGCGgCCGGuGc -3'
miRNA:   3'- gcCGCGUCCCaaa--CC-GCCGC-GGCCuC- -5'
24370 5' -62.8 NC_005264.1 + 7872 0.67 0.565333
Target:  5'- gCGGCGUcGGcGccccagauGCGGCGUCGGAGg -3'
miRNA:   3'- -GCCGCGuCC-Caaac----CGCCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 121918 0.67 0.546271
Target:  5'- gCGGCGCGGcGGggagGGCgacGGCGagagcgaCGGAGu -3'
miRNA:   3'- -GCCGCGUC-CCaaa-CCG---CCGCg------GCCUC- -5'
24370 5' -62.8 NC_005264.1 + 2892 0.67 0.546271
Target:  5'- gCGGCGCGGcGGggagGGCgacGGCGagagcgaCGGAGu -3'
miRNA:   3'- -GCCGCGUC-CCaaa-CCG---CCGCg------GCCUC- -5'
24370 5' -62.8 NC_005264.1 + 20247 0.67 0.535874
Target:  5'- gGGUggGCAGGGguu-GCGGCGCggccucgCGGAGg -3'
miRNA:   3'- gCCG--CGUCCCaaacCGCCGCG-------GCCUC- -5'
24370 5' -62.8 NC_005264.1 + 43208 0.68 0.531171
Target:  5'- cCGGCGgGGGGggggggggcuacGGCGGgGCUGGcGGg -3'
miRNA:   3'- -GCCGCgUCCCaaa---------CCGCCgCGGCC-UC- -5'
24370 5' -62.8 NC_005264.1 + 162235 0.68 0.531171
Target:  5'- cCGGCGgGGGGggggggggcuacGGCGGgGCUGGcGGg -3'
miRNA:   3'- -GCCGCgUCCCaaa---------CCGCCgCGGCC-UC- -5'
24370 5' -62.8 NC_005264.1 + 116527 0.68 0.527419
Target:  5'- gCGGUcuucgGUGGGGUcgUUGGgGGCuaCGGAGg -3'
miRNA:   3'- -GCCG-----CGUCCCA--AACCgCCGcgGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 21323 0.68 0.508815
Target:  5'- gGGUGCAGuug-UGGCGcccguagauGCGCCGGGGc -3'
miRNA:   3'- gCCGCGUCccaaACCGC---------CGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 37982 0.69 0.471591
Target:  5'- gCGGC-CAGGcGagUGGCGGCcaccgccGCCGGAc -3'
miRNA:   3'- -GCCGcGUCC-CaaACCGCCG-------CGGCCUc -5'
24370 5' -62.8 NC_005264.1 + 157009 0.69 0.471591
Target:  5'- gCGGC-CAGGcGagUGGCGGCcaccgccGCCGGAc -3'
miRNA:   3'- -GCCGcGUCC-CaaACCGCCG-------CGGCCUc -5'
24370 5' -62.8 NC_005264.1 + 75706 0.69 0.463604
Target:  5'- uCGGCGCGaagacuGGUgcgccccGCgGGCGCCGGAGg -3'
miRNA:   3'- -GCCGCGUc-----CCAaac----CG-CCGCGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 120051 0.69 0.454814
Target:  5'- gGGUcuaGCGGGGgggaaguaggUGGCGGaCGCCGGc- -3'
miRNA:   3'- gCCG---CGUCCCaa--------ACCGCC-GCGGCCuc -5'
24370 5' -62.8 NC_005264.1 + 3622 0.69 0.445249
Target:  5'- gGGCGCugugggcggggugGGGGUUUcugggaGGCGGUuugaGCUGGGGg -3'
miRNA:   3'- gCCGCG-------------UCCCAAA------CCGCCG----CGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 87653 0.69 0.437508
Target:  5'- gGGCGCGGGaccUGGCGGCaaCGGGc -3'
miRNA:   3'- gCCGCGUCCcaaACCGCCGcgGCCUc -5'
24370 5' -62.8 NC_005264.1 + 66690 0.7 0.387962
Target:  5'- cCGGCGCcGGGcg-GGgGGCguacuacgugucGCCGGGGa -3'
miRNA:   3'- -GCCGCGuCCCaaaCCgCCG------------CGGCCUC- -5'
24370 5' -62.8 NC_005264.1 + 94601 0.7 0.380069
Target:  5'- gCGGCGCGGGcauggcUUGGCGGUGCggcgUGGAc -3'
miRNA:   3'- -GCCGCGUCCca----AACCGCCGCG----GCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.