miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 3' -51.6 NC_005264.1 + 3803 0.66 0.99233
Target:  5'- uGCGUggcGGuCCGCGAguUCGGgcCCGGgcgggGCCg -3'
miRNA:   3'- -CGCAa--UC-GGUGCU--AGUC--GGCCaa---UGG- -5'
24371 3' -51.6 NC_005264.1 + 3960 0.75 0.744387
Target:  5'- aCGUccUGGCCGCGc-CGGCCGGcuUUACCg -3'
miRNA:   3'- cGCA--AUCGGUGCuaGUCGGCC--AAUGG- -5'
24371 3' -51.6 NC_005264.1 + 4232 0.68 0.979437
Target:  5'- gGCGgc-GCCACgcgaagguaGAUCAGucCCGGcUUGCCg -3'
miRNA:   3'- -CGCaauCGGUG---------CUAGUC--GGCC-AAUGG- -5'
24371 3' -51.6 NC_005264.1 + 4703 0.67 0.985422
Target:  5'- cGCGU---CCACGAcagCAGCUGGUccagacgccgcUGCCc -3'
miRNA:   3'- -CGCAaucGGUGCUa--GUCGGCCA-----------AUGG- -5'
24371 3' -51.6 NC_005264.1 + 6489 0.71 0.896639
Target:  5'- uGCGc-GGCCAuCGAg-GGCCGGUaGCCg -3'
miRNA:   3'- -CGCaaUCGGU-GCUagUCGGCCAaUGG- -5'
24371 3' -51.6 NC_005264.1 + 6832 0.66 0.991215
Target:  5'- aGCGUc-GCCGgGcgUAccuuGCUGGUUGCCg -3'
miRNA:   3'- -CGCAauCGGUgCuaGU----CGGCCAAUGG- -5'
24371 3' -51.6 NC_005264.1 + 21356 0.68 0.977085
Target:  5'- uCGUcccgGGCCGCc-UCGGCCGGUggaaagagGCCc -3'
miRNA:   3'- cGCAa---UCGGUGcuAGUCGGCCAa-------UGG- -5'
24371 3' -51.6 NC_005264.1 + 24180 0.67 0.981605
Target:  5'- ----cGGCCGCGGUCGGUaaagucuggcgCGGU-GCCg -3'
miRNA:   3'- cgcaaUCGGUGCUAGUCG-----------GCCAaUGG- -5'
24371 3' -51.6 NC_005264.1 + 25207 0.68 0.971796
Target:  5'- cGUGUUGGCgcaCACGGU-GGCCaGGgcagUGCCg -3'
miRNA:   3'- -CGCAAUCG---GUGCUAgUCGG-CCa---AUGG- -5'
24371 3' -51.6 NC_005264.1 + 27896 0.7 0.937112
Target:  5'- cGCGUUGGCUuucguGCaGAUCGGCCGagcuCCu -3'
miRNA:   3'- -CGCAAUCGG-----UG-CUAGUCGGCcaauGG- -5'
24371 3' -51.6 NC_005264.1 + 27978 0.7 0.923486
Target:  5'- cGCGUgacgacgaccgccgUAGCCGCGGcccaucgauccaggUCGGUCGGggGCg -3'
miRNA:   3'- -CGCA--------------AUCGGUGCU--------------AGUCGGCCaaUGg -5'
24371 3' -51.6 NC_005264.1 + 29333 0.66 0.993331
Target:  5'- aGCGccuccugcGGCUACGAcgUCuGCCGGguacGCCg -3'
miRNA:   3'- -CGCaa------UCGGUGCU--AGuCGGCCaa--UGG- -5'
24371 3' -51.6 NC_005264.1 + 29687 0.66 0.994223
Target:  5'- aGCGUccAGCCuCG-UCAuCCGGUcGCCu -3'
miRNA:   3'- -CGCAa-UCGGuGCuAGUcGGCCAaUGG- -5'
24371 3' -51.6 NC_005264.1 + 30210 0.69 0.958689
Target:  5'- cGCGUcccGaCCGCGAUC-GCCGGUc-CCg -3'
miRNA:   3'- -CGCAau-C-GGUGCUAGuCGGCCAauGG- -5'
24371 3' -51.6 NC_005264.1 + 30388 0.66 0.994223
Target:  5'- cGCGUcucggcGGCgGCGGUCGcgcGCCGG-UGCg -3'
miRNA:   3'- -CGCAa-----UCGgUGCUAGU---CGGCCaAUGg -5'
24371 3' -51.6 NC_005264.1 + 32396 0.69 0.958689
Target:  5'- gGCGUccGCCGCGAcuuUguGCUGGaacGCCa -3'
miRNA:   3'- -CGCAauCGGUGCU---AguCGGCCaa-UGG- -5'
24371 3' -51.6 NC_005264.1 + 37429 0.69 0.958689
Target:  5'- cCGUggAGCagCACGAgCGGCUGGUcGCCg -3'
miRNA:   3'- cGCAa-UCG--GUGCUaGUCGGCCAaUGG- -5'
24371 3' -51.6 NC_005264.1 + 39027 0.7 0.926778
Target:  5'- gGCGUUcGCCaACGAccCAGUCGGacugGCCg -3'
miRNA:   3'- -CGCAAuCGG-UGCUa-GUCGGCCaa--UGG- -5'
24371 3' -51.6 NC_005264.1 + 40019 0.68 0.968845
Target:  5'- cGCGgaccGCCACgcaGAUCGGCggCGGUcgACCa -3'
miRNA:   3'- -CGCaau-CGGUG---CUAGUCG--GCCAa-UGG- -5'
24371 3' -51.6 NC_005264.1 + 43662 0.69 0.962298
Target:  5'- gGCGUUGGCCGCuGAaccguUCuuugguGCCGGcgGCa -3'
miRNA:   3'- -CGCAAUCGGUG-CU-----AGu-----CGGCCaaUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.