miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 3' -51.6 NC_005264.1 + 43662 0.69 0.962298
Target:  5'- gGCGUUGGCCGCuGAaccguUCuuugguGCCGGcgGCa -3'
miRNA:   3'- -CGCAAUCGGUG-CU-----AGu-----CGGCCaaUGg -5'
24371 3' -51.6 NC_005264.1 + 116447 0.7 0.932069
Target:  5'- cGCGggGGCgACGAUCgGGgCGGUUGa- -3'
miRNA:   3'- -CGCaaUCGgUGCUAG-UCgGCCAAUgg -5'
24371 3' -51.6 NC_005264.1 + 136263 0.7 0.936123
Target:  5'- uGgGUUAGCgGCGAaauuggguugcgCGGCCGucGUUACCg -3'
miRNA:   3'- -CgCAAUCGgUGCUa-----------GUCGGC--CAAUGG- -5'
24371 3' -51.6 NC_005264.1 + 61809 0.7 0.937112
Target:  5'- ----gGGCCGCGggCAucGCCGGgcagUGCCu -3'
miRNA:   3'- cgcaaUCGGUGCuaGU--CGGCCa---AUGG- -5'
24371 3' -51.6 NC_005264.1 + 91895 0.69 0.95485
Target:  5'- -gGUUGGCCGCGG-CAGCgaugggcgggcgCGGcgACCa -3'
miRNA:   3'- cgCAAUCGGUGCUaGUCG------------GCCaaUGG- -5'
24371 3' -51.6 NC_005264.1 + 50494 0.69 0.958689
Target:  5'- aCG-UGGCCACGGccgCGGCCaGUucUGCCu -3'
miRNA:   3'- cGCaAUCGGUGCUa--GUCGGcCA--AUGG- -5'
24371 3' -51.6 NC_005264.1 + 151423 0.69 0.958689
Target:  5'- gGCGUccGCCGCGAcuuUguGCUGGaacGCCa -3'
miRNA:   3'- -CGCAauCGGUGCU---AguCGGCCaa-UGG- -5'
24371 3' -51.6 NC_005264.1 + 149237 0.69 0.958689
Target:  5'- cGCGUcccGaCCGCGAUC-GCCGGUc-CCg -3'
miRNA:   3'- -CGCAau-C-GGUGCUAGuCGGCCAauGG- -5'
24371 3' -51.6 NC_005264.1 + 156456 0.69 0.958689
Target:  5'- cCGUggAGCagCACGAgCGGCUGGUcGCCg -3'
miRNA:   3'- cGCAa-UCG--GUGCUaGUCGGCCAaUGG- -5'
24371 3' -51.6 NC_005264.1 + 158054 0.7 0.926778
Target:  5'- gGCGUUcGCCaACGAccCAGUCGGacugGCCg -3'
miRNA:   3'- -CGCAAuCGG-UGCUa-GUCGGCCaa--UGG- -5'
24371 3' -51.6 NC_005264.1 + 27978 0.7 0.923486
Target:  5'- cGCGUgacgacgaccgccgUAGCCGCGGcccaucgauccaggUCGGUCGGggGCg -3'
miRNA:   3'- -CGCA--------------AUCGGUGCU--------------AGUCGGCCaaUGg -5'
24371 3' -51.6 NC_005264.1 + 125516 0.71 0.896639
Target:  5'- uGCGc-GGCCAuCGAg-GGCCGGUaGCCg -3'
miRNA:   3'- -CGCaaUCGGU-GCUagUCGGCCAaUGG- -5'
24371 3' -51.6 NC_005264.1 + 59982 0.77 0.600717
Target:  5'- cGCGgcggUGGCCGCGAgcgagaCGGCCGcGUgGCCg -3'
miRNA:   3'- -CGCa---AUCGGUGCUa-----GUCGGC-CAaUGG- -5'
24371 3' -51.6 NC_005264.1 + 88110 0.75 0.701173
Target:  5'- aGCGUcGGCCggcGCGGUUgcguacgggcugauGGCCGGUUACUu -3'
miRNA:   3'- -CGCAaUCGG---UGCUAG--------------UCGGCCAAUGG- -5'
24371 3' -51.6 NC_005264.1 + 122986 0.75 0.744387
Target:  5'- aCGUccUGGCCGCGc-CGGCCGGcuUUACCg -3'
miRNA:   3'- cGCA--AUCGGUGCuaGUCGGCC--AAUGG- -5'
24371 3' -51.6 NC_005264.1 + 64149 0.74 0.801382
Target:  5'- aCGgc-GCCGCGAUcCGGCCGGUgugcaagcGCCg -3'
miRNA:   3'- cGCaauCGGUGCUA-GUCGGCCAa-------UGG- -5'
24371 3' -51.6 NC_005264.1 + 93666 0.72 0.860578
Target:  5'- cGCGUUAcaacuGCCAUGAUCA-CCGcGcUUACCg -3'
miRNA:   3'- -CGCAAU-----CGGUGCUAGUcGGC-C-AAUGG- -5'
24371 3' -51.6 NC_005264.1 + 116633 0.72 0.868239
Target:  5'- uCGUUGGCCaucuuacuaGCGGUCcGCCGGcgUGCUc -3'
miRNA:   3'- cGCAAUCGG---------UGCUAGuCGGCCa-AUGG- -5'
24371 3' -51.6 NC_005264.1 + 74906 0.72 0.882899
Target:  5'- uUGUUAGCCAUGGUCGGCgCG--UACUc -3'
miRNA:   3'- cGCAAUCGGUGCUAGUCG-GCcaAUGG- -5'
24371 3' -51.6 NC_005264.1 + 93707 0.71 0.889886
Target:  5'- aGCGcgGGCCACaGAUCAGgCGGcagacaACCu -3'
miRNA:   3'- -CGCaaUCGGUG-CUAGUCgGCCaa----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.