miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 21921 0.66 0.895945
Target:  5'- gUAGUGCUGUCu-UCAACgGUUGCCGc -3'
miRNA:   3'- gAUCGUGGCAGcuGGUUGgCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 22570 0.66 0.908327
Target:  5'- aCUGGCGuuGcccccuggaagCGGCgucACCGUCGCCGa -3'
miRNA:   3'- -GAUCGUggCa----------GCUGgu-UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 25408 0.67 0.871457
Target:  5'- -gAGCACCGccaggccgaaguacUCGGCCAagcaguccaggGCCuccucgaacugcuuGUCGCCGa -3'
miRNA:   3'- gaUCGUGGC--------------AGCUGGU-----------UGG--------------CAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 25543 0.66 0.91418
Target:  5'- -gGGUGCCGUaCGcCCG--CGUCGCCGc -3'
miRNA:   3'- gaUCGUGGCA-GCuGGUugGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 26177 0.71 0.661966
Target:  5'- -cGGCACUGUCGGCgGgGCCGUUGgCGc -3'
miRNA:   3'- gaUCGUGGCAGCUGgU-UGGCAGCgGC- -5'
24371 5' -56.7 NC_005264.1 + 30842 0.75 0.46691
Target:  5'- uCUGGCGCCgGUCGGCCcACCGcCaCCGg -3'
miRNA:   3'- -GAUCGUGG-CAGCUGGuUGGCaGcGGC- -5'
24371 5' -56.7 NC_005264.1 + 32374 0.66 0.919806
Target:  5'- uCUGGCgaggauGCCGgCGGCCGGC-GUCcGCCGc -3'
miRNA:   3'- -GAUCG------UGGCaGCUGGUUGgCAG-CGGC- -5'
24371 5' -56.7 NC_005264.1 + 34753 0.66 0.908327
Target:  5'- --cGCGCCgGUCG-CC-GCUGUCGCUa -3'
miRNA:   3'- gauCGUGG-CAGCuGGuUGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 35482 0.68 0.837137
Target:  5'- -gAGUGCCG-CGGCCGAUCGcgacggcuugguaUCGCUGg -3'
miRNA:   3'- gaUCGUGGCaGCUGGUUGGC-------------AGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 35795 0.66 0.908327
Target:  5'- gUGGCGCCGUCGuggcgggcGCCucuGCCGgcccCGCa- -3'
miRNA:   3'- gAUCGUGGCAGC--------UGGu--UGGCa---GCGgc -5'
24371 5' -56.7 NC_005264.1 + 36755 0.75 0.448831
Target:  5'- -cGGCGCCGgcCGGC--GCCGUCGCCGc -3'
miRNA:   3'- gaUCGUGGCa-GCUGguUGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 37971 0.67 0.880618
Target:  5'- -gGGCgauaACCG-CGGCCAggcgaguggcggccACCGcCGCCGg -3'
miRNA:   3'- gaUCG----UGGCaGCUGGU--------------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 39100 0.66 0.919806
Target:  5'- -cAGCGgCGUCugGACCAgcuGCUGUCGUgGa -3'
miRNA:   3'- gaUCGUgGCAG--CUGGU---UGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 40500 0.67 0.853638
Target:  5'- --uGC-CCGUCGGCCcGCCGUUcggaaGCCc -3'
miRNA:   3'- gauCGuGGCAGCUGGuUGGCAG-----CGGc -5'
24371 5' -56.7 NC_005264.1 + 40642 0.67 0.868567
Target:  5'- --cGCGCCGUCGcgacGCgGAggGUCGCCGu -3'
miRNA:   3'- gauCGUGGCAGC----UGgUUggCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 40903 0.69 0.786779
Target:  5'- -cGGCGacuCCGUCG-CUucGCCGUCGCCc -3'
miRNA:   3'- gaUCGU---GGCAGCuGGu-UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 42120 0.7 0.749902
Target:  5'- -cGGCACCGUCcuCCGcCCGacCGCCGg -3'
miRNA:   3'- gaUCGUGGCAGcuGGUuGGCa-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 43854 0.69 0.756486
Target:  5'- uUGGCGCUGg-GGCCGGCaaagacgucuucguCGUCGCCGu -3'
miRNA:   3'- gAUCGUGGCagCUGGUUG--------------GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 43897 0.74 0.476089
Target:  5'- -gGGCGCCGgagaCGAUagcgCGGCCGUCGCCu -3'
miRNA:   3'- gaUCGUGGCa---GCUG----GUUGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 45781 0.67 0.851332
Target:  5'- -gGGCGCCGgagCGGCUAuugcggucugggccGCCG-CGCUGa -3'
miRNA:   3'- gaUCGUGGCa--GCUGGU--------------UGGCaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.