miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 2370 0.7 0.749902
Target:  5'- cCUGGCACCGagUGGCCGucgcccgcaggaGCCcggCGCCGg -3'
miRNA:   3'- -GAUCGUGGCa-GCUGGU------------UGGca-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 2855 0.66 0.921992
Target:  5'- --cGCGCCGUcgcccgcugcggcugCGAUCGACCGgggCGCgGc -3'
miRNA:   3'- gauCGUGGCA---------------GCUGGUUGGCa--GCGgC- -5'
24371 5' -56.7 NC_005264.1 + 3768 0.66 0.895945
Target:  5'- -gGGCGCUG-CGGgcccuuggUCGACCGcCGCCGa -3'
miRNA:   3'- gaUCGUGGCaGCU--------GGUUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 5150 0.67 0.875729
Target:  5'- -gGGCgucGCCGUCGucgucgguGCCGGCC-UCGUCGg -3'
miRNA:   3'- gaUCG---UGGCAGC--------UGGUUGGcAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 5780 0.68 0.837941
Target:  5'- --cGCgACCGUCGugCAccACCGaggCGCCc -3'
miRNA:   3'- gauCG-UGGCAGCugGU--UGGCa--GCGGc -5'
24371 5' -56.7 NC_005264.1 + 7065 0.67 0.861202
Target:  5'- -cGGCGCCGgcCGGC--GCCGUCGCg- -3'
miRNA:   3'- gaUCGUGGCa-GCUGguUGGCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 7117 0.68 0.813068
Target:  5'- --cGCGCCGUuagcgcCGGCCGACUGa-GCCGa -3'
miRNA:   3'- gauCGUGGCA------GCUGGUUGGCagCGGC- -5'
24371 5' -56.7 NC_005264.1 + 7406 0.76 0.422457
Target:  5'- -cGGCGCCGUCGuCCAuugguUCGUgCGCCGg -3'
miRNA:   3'- gaUCGUGGCAGCuGGUu----GGCA-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 8317 0.66 0.908327
Target:  5'- --uGCGCCG-CGGCgucGCCGUCGUCc -3'
miRNA:   3'- gauCGUGGCaGCUGgu-UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 8355 0.68 0.813068
Target:  5'- -gGGCgACCGUCGcugauGCUuACCGgCGCCGg -3'
miRNA:   3'- gaUCG-UGGCAGC-----UGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 11418 0.66 0.91418
Target:  5'- -cAGCACaaaGUCGcggcggacGCCGGCCGccggcauccUCGCCa -3'
miRNA:   3'- gaUCGUGg--CAGC--------UGGUUGGC---------AGCGGc -5'
24371 5' -56.7 NC_005264.1 + 12777 0.67 0.853638
Target:  5'- --cGCAgCCGcaCGACCGcuaggcggcACCGUCGCCc -3'
miRNA:   3'- gauCGU-GGCa-GCUGGU---------UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 13198 0.75 0.439937
Target:  5'- --cGCGgauCCGUCG-CCGccGCCGUCGCCGg -3'
miRNA:   3'- gauCGU---GGCAGCuGGU--UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 13416 0.75 0.431145
Target:  5'- --cGCACCGgcgcgCGACC-GCCGcCGCCGa -3'
miRNA:   3'- gauCGUGGCa----GCUGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 16764 0.69 0.795686
Target:  5'- gUAGCGagGUC--CCGAUCGUCGCCGg -3'
miRNA:   3'- gAUCGUggCAGcuGGUUGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 19186 0.72 0.621921
Target:  5'- aUGGCuCCGg-GGCCGACCGUCgGCCc -3'
miRNA:   3'- gAUCGuGGCagCUGGUUGGCAG-CGGc -5'
24371 5' -56.7 NC_005264.1 + 19919 0.72 0.615913
Target:  5'- gUGGCGCCGU--GCCAguaccucgaggacgcAUCGUCGCCGu -3'
miRNA:   3'- gAUCGUGGCAgcUGGU---------------UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 21065 0.66 0.895945
Target:  5'- uUAGCG-CGUUGGCCAagccauauGCCGugcUCGCCu -3'
miRNA:   3'- gAUCGUgGCAGCUGGU--------UGGC---AGCGGc -5'
24371 5' -56.7 NC_005264.1 + 21537 0.67 0.8582
Target:  5'- -cAGCACCGggCGACCGuuuaugguguucuCCGaggaCGCCGg -3'
miRNA:   3'- gaUCGUGGCa-GCUGGUu------------GGCa---GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 21584 0.67 0.868567
Target:  5'- gCUAGUACCGUCGGC-GACCGaaauauaggUGCUa -3'
miRNA:   3'- -GAUCGUGGCAGCUGgUUGGCa--------GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.