miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 126144 0.68 0.813068
Target:  5'- --cGCGCCGUuagcgcCGGCCGACUGa-GCCGa -3'
miRNA:   3'- gauCGUGGCA------GCUGGUUGGCagCGGC- -5'
24371 5' -56.7 NC_005264.1 + 42120 0.7 0.749902
Target:  5'- -cGGCACCGUCcuCCGcCCGacCGCCGg -3'
miRNA:   3'- gaUCGUGGCAGcuGGUuGGCa-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 121397 0.7 0.749902
Target:  5'- cCUGGCACCGagUGGCCGucgcccgcaggaGCCcggCGCCGg -3'
miRNA:   3'- -GAUCGUGGCa-GCUGGU------------UGGca-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 80968 0.7 0.749902
Target:  5'- -aGGCGCCaUCGACCAAuuucuuccUCGaCGCCGa -3'
miRNA:   3'- gaUCGUGGcAGCUGGUU--------GGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 43854 0.69 0.756486
Target:  5'- uUGGCGCUGg-GGCCGGCaaagacgucuucguCGUCGCCGu -3'
miRNA:   3'- gAUCGUGGCagCUGGUUG--------------GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 144962 0.69 0.795686
Target:  5'- --cGCGCCGUaGAUCAGCC--CGCCGa -3'
miRNA:   3'- gauCGUGGCAgCUGGUUGGcaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 159929 0.68 0.804452
Target:  5'- -cGGCGacuCCGUCGcuCUcGCCGUCGCCc -3'
miRNA:   3'- gaUCGU---GGCAGCu-GGuUGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 127382 0.68 0.813068
Target:  5'- -gGGCgACCGUCGcugauGCUuACCGgCGCCGg -3'
miRNA:   3'- gaUCG-UGGCAGC-----UGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 86615 0.68 0.813068
Target:  5'- -aAGCGCuaCGUUGAUCAACCGcCGCa- -3'
miRNA:   3'- gaUCGUG--GCAGCUGGUUGGCaGCGgc -5'
24371 5' -56.7 NC_005264.1 + 80637 0.7 0.730834
Target:  5'- gCUGGCGCCG-CuACCGucuaauacgaugGCCGcCGCCGa -3'
miRNA:   3'- -GAUCGUGGCaGcUGGU------------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 59716 0.7 0.711438
Target:  5'- --cGCGCCGgCGGCU-ACCG-CGCCGg -3'
miRNA:   3'- gauCGUGGCaGCUGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 144571 0.71 0.681881
Target:  5'- gCUAGCGCUGUaCGGCCcg-UGUCGCCc -3'
miRNA:   3'- -GAUCGUGGCA-GCUGGuugGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 132443 0.75 0.431145
Target:  5'- --cGCACCGgcgcgCGACC-GCCGcCGCCGa -3'
miRNA:   3'- gauCGUGGCa----GCUGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 132225 0.75 0.439937
Target:  5'- --cGCGgauCCGUCG-CCGccGCCGUCGCCGg -3'
miRNA:   3'- gauCGU---GGCAGCuGGU--UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 155781 0.75 0.448831
Target:  5'- -cGGCGCCGgcCGGC--GCCGUCGCCGc -3'
miRNA:   3'- gaUCGUGGCa-GCUGguUGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 30842 0.75 0.46691
Target:  5'- uCUGGCGCCgGUCGGCCcACCGcCaCCGg -3'
miRNA:   3'- -GAUCGUGG-CAGCUGGuUGGCaGcGGC- -5'
24371 5' -56.7 NC_005264.1 + 64040 0.73 0.532893
Target:  5'- -cAGCACCGcCGAuacCCGAUCGUCGCg- -3'
miRNA:   3'- gaUCGUGGCaGCU---GGUUGGCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 90754 0.73 0.571089
Target:  5'- -cGGCcauuacgACCG-CGACCAGCaCGUCGUCGg -3'
miRNA:   3'- gaUCG-------UGGCaGCUGGUUG-GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 64150 0.73 0.572078
Target:  5'- -cGGCGCCG-CGAuCCGGCCGgugugcaagCGCCGc -3'
miRNA:   3'- gaUCGUGGCaGCU-GGUUGGCa--------GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 19919 0.72 0.615913
Target:  5'- gUGGCGCCGU--GCCAguaccucgaggacgcAUCGUCGCCGu -3'
miRNA:   3'- gAUCGUGGCAgcUGGU---------------UGGCAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.