miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 46536 0.66 0.895945
Target:  5'- -aAGUucCCGUCGAaggccaCAGCCGUaGCCGc -3'
miRNA:   3'- gaUCGu-GGCAGCUg-----GUUGGCAgCGGC- -5'
24371 5' -56.7 NC_005264.1 + 64295 0.66 0.919806
Target:  5'- -gAGUAUCG-CGGCCcacAGCgCGUUGCCGc -3'
miRNA:   3'- gaUCGUGGCaGCUGG---UUG-GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 130445 0.66 0.91418
Target:  5'- -cAGCACaaaGUCGcggcggacGCCGGCCGccggcauccUCGCCa -3'
miRNA:   3'- gaUCGUGg--CAGC--------UGGUUGGC---------AGCGGc -5'
24371 5' -56.7 NC_005264.1 + 25543 0.66 0.91418
Target:  5'- -gGGUGCCGUaCGcCCG--CGUCGCCGc -3'
miRNA:   3'- gaUCGUGGCA-GCuGGUugGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 125975 0.66 0.913605
Target:  5'- -aGGCAgauaCGUCGACCAccaauacaucuucGUCGUCGCUGu -3'
miRNA:   3'- gaUCGUg---GCAGCUGGU-------------UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 21065 0.66 0.895945
Target:  5'- uUAGCG-CGUUGGCCAagccauauGCCGugcUCGCCu -3'
miRNA:   3'- gAUCGUgGCAGCUGGU--------UGGC---AGCGGc -5'
24371 5' -56.7 NC_005264.1 + 105308 0.66 0.902248
Target:  5'- aUGGCGCCuucugUGGCCAACCaucaCGCCa -3'
miRNA:   3'- gAUCGUGGca---GCUGGUUGGca--GCGGc -5'
24371 5' -56.7 NC_005264.1 + 116941 0.66 0.908327
Target:  5'- -cGGCuCCGUCGAUgAGCCG-C-CCGa -3'
miRNA:   3'- gaUCGuGGCAGCUGgUUGGCaGcGGC- -5'
24371 5' -56.7 NC_005264.1 + 127344 0.66 0.908327
Target:  5'- --uGCGCCG-CGGCgucGCCGUCGUCc -3'
miRNA:   3'- gauCGUGGCaGCUGgu-UGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 100583 0.66 0.91418
Target:  5'- -aAGCGCCGUCGuuguaCAGCCuGUgGCgGc -3'
miRNA:   3'- gaUCGUGGCAGCug---GUUGG-CAgCGgC- -5'
24371 5' -56.7 NC_005264.1 + 48005 0.66 0.910695
Target:  5'- --cGCACCGUggauauguuuucccaCGACCAugGCgCGUgGCCa -3'
miRNA:   3'- gauCGUGGCA---------------GCUGGU--UG-GCAgCGGc -5'
24371 5' -56.7 NC_005264.1 + 154821 0.66 0.908327
Target:  5'- gUGGCGCCGUCGuggcgggcGCCucuGCCGgcccCGCa- -3'
miRNA:   3'- gAUCGUGGCAGC--------UGGu--UGGCa---GCGgc -5'
24371 5' -56.7 NC_005264.1 + 122794 0.66 0.895945
Target:  5'- -gGGCGCUG-CGGgcccuuggUCGACCGcCGCCGa -3'
miRNA:   3'- gaUCGUGGCaGCU--------GGUUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 91078 0.66 0.906526
Target:  5'- -cGGCGCCagcagGUCGGCUAgucguaacgcgaugGCUGUCGCgGa -3'
miRNA:   3'- gaUCGUGG-----CAGCUGGU--------------UGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 51414 0.66 0.908327
Target:  5'- aUGGCguacGCCGggGAgCcGCCGUCGCCc -3'
miRNA:   3'- gAUCG----UGGCagCUgGuUGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 148456 0.66 0.91418
Target:  5'- --cGCugCG-CGACgAACCGuuUCGUCGg -3'
miRNA:   3'- gauCGugGCaGCUGgUUGGC--AGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 88104 0.66 0.91418
Target:  5'- -gGGCACagCGUCGGCCGgcGCgGUUGCg- -3'
miRNA:   3'- gaUCGUG--GCAGCUGGU--UGgCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 151401 0.66 0.919806
Target:  5'- uCUGGCgaggauGCCGgCGGCCGGC-GUCcGCCGc -3'
miRNA:   3'- -GAUCG------UGGCaGCUGGUUGgCAG-CGGC- -5'
24371 5' -56.7 NC_005264.1 + 68256 0.66 0.91418
Target:  5'- --cGCGCCGcgggCGGCCugcuGCUGcCGCCu -3'
miRNA:   3'- gauCGUGGCa---GCUGGu---UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 34753 0.66 0.908327
Target:  5'- --cGCGCCgGUCG-CC-GCUGUCGCUa -3'
miRNA:   3'- gauCGUGG-CAGCuGGuUGGCAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.