miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 129199 1.08 0.00375
Target:  5'- gCUAGCACCGUCGACCAACCGUCGCCGc -3'
miRNA:   3'- -GAUCGUGGCAGCUGGUUGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 7406 0.76 0.422457
Target:  5'- -cGGCGCCGUCGuCCAuugguUCGUgCGCCGg -3'
miRNA:   3'- gaUCGUGGCAGCuGGUu----GGCA-GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 132443 0.75 0.431145
Target:  5'- --cGCACCGgcgcgCGACC-GCCGcCGCCGa -3'
miRNA:   3'- gauCGUGGCa----GCUGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 13416 0.75 0.431145
Target:  5'- --cGCACCGgcgcgCGACC-GCCGcCGCCGa -3'
miRNA:   3'- gauCGUGGCa----GCUGGuUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 132225 0.75 0.439937
Target:  5'- --cGCGgauCCGUCG-CCGccGCCGUCGCCGg -3'
miRNA:   3'- gauCGU---GGCAGCuGGU--UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 13198 0.75 0.439937
Target:  5'- --cGCGgauCCGUCG-CCGccGCCGUCGCCGg -3'
miRNA:   3'- gauCGU---GGCAGCuGGU--UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 36755 0.75 0.448831
Target:  5'- -cGGCGCCGgcCGGC--GCCGUCGCCGc -3'
miRNA:   3'- gaUCGUGGCa-GCUGguUGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 155781 0.75 0.448831
Target:  5'- -cGGCGCCGgcCGGC--GCCGUCGCCGc -3'
miRNA:   3'- gaUCGUGGCa-GCUGguUGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 55621 0.75 0.457822
Target:  5'- gCUGGCGCCGaauGCCAACCGcgcgCGCCGc -3'
miRNA:   3'- -GAUCGUGGCagcUGGUUGGCa---GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 30842 0.75 0.46691
Target:  5'- uCUGGCGCCgGUCGGCCcACCGcCaCCGg -3'
miRNA:   3'- -GAUCGUGG-CAGCUGGuUGGCaGcGGC- -5'
24371 5' -56.7 NC_005264.1 + 43897 0.74 0.476089
Target:  5'- -gGGCGCCGgagaCGAUagcgCGGCCGUCGCCu -3'
miRNA:   3'- gaUCGUGGCa---GCUG----GUUGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 117432 0.74 0.494711
Target:  5'- cCUGGCAUCGUCGGCgcACaCGuUCGCCGu -3'
miRNA:   3'- -GAUCGUGGCAGCUGguUG-GC-AGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 64040 0.73 0.532893
Target:  5'- -cAGCACCGcCGAuacCCGAUCGUCGCg- -3'
miRNA:   3'- gaUCGUGGCaGCU---GGUUGGCAGCGgc -5'
24371 5' -56.7 NC_005264.1 + 101941 0.73 0.562207
Target:  5'- aCUGGCGgCGUCGGCCccACCGcggcguaCGCCGa -3'
miRNA:   3'- -GAUCGUgGCAGCUGGu-UGGCa------GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 90754 0.73 0.571089
Target:  5'- -cGGCcauuacgACCG-CGACCAGCaCGUCGUCGg -3'
miRNA:   3'- gaUCG-------UGGCaGCUGGUUG-GCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 64150 0.73 0.572078
Target:  5'- -cGGCGCCG-CGAuCCGGCCGgugugcaagCGCCGc -3'
miRNA:   3'- gaUCGUGGCaGCU-GGUUGGCa--------GCGGC- -5'
24371 5' -56.7 NC_005264.1 + 68138 0.72 0.591938
Target:  5'- -gGGCGCCGUUGACCAcgGCCGUuaugugaaCGuuGc -3'
miRNA:   3'- gaUCGUGGCAGCUGGU--UGGCA--------GCggC- -5'
24371 5' -56.7 NC_005264.1 + 126740 0.72 0.591938
Target:  5'- -gAGUACCaUCuGCCAGCCG-CGCCGa -3'
miRNA:   3'- gaUCGUGGcAGcUGGUUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 19919 0.72 0.615913
Target:  5'- gUGGCGCCGU--GCCAguaccucgaggacgcAUCGUCGCCGu -3'
miRNA:   3'- gAUCGUGGCAgcUGGU---------------UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 19186 0.72 0.621921
Target:  5'- aUGGCuCCGg-GGCCGACCGUCgGCCc -3'
miRNA:   3'- gAUCGuGGCagCUGGUUGGCAG-CGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.