Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24372 | 5' | -49.3 | NC_005264.1 | + | 71365 | 0.66 | 0.999056 |
Target: 5'- cCGGAGGCCAggUGGgcaacacguuauccgCGCGGAGcgUCAUc -3' miRNA: 3'- -GCUUCCGGU--ACCa--------------GUGUUUCa-AGUGc -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 100735 | 0.66 | 0.998803 |
Target: 5'- aGAGGGCgcUGGUCGagcucgcCGAGGcgUCACGa -3' miRNA: 3'- gCUUCCGguACCAGU-------GUUUCa-AGUGC- -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 85674 | 0.66 | 0.998577 |
Target: 5'- -uAAGGCgAccUGGcaaGCGGAGUUCGCGg -3' miRNA: 3'- gcUUCCGgU--ACCag-UGUUUCAAGUGC- -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 14833 | 0.66 | 0.998284 |
Target: 5'- aCGgcGGCUAUGGcgacgaggacUC-CAGAGcUCACGa -3' miRNA: 3'- -GCuuCCGGUACC----------AGuGUUUCaAGUGC- -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 156907 | 0.66 | 0.997942 |
Target: 5'- gCGGguucGGGCCGUGGUUAgAuAGcgccUCGCGa -3' miRNA: 3'- -GCU----UCCGGUACCAGUgUuUCa---AGUGC- -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 34648 | 0.66 | 0.997829 |
Target: 5'- ---cGGCCAccGGUCGCGAGGUaacaaaggaagagaUCGCu -3' miRNA: 3'- gcuuCCGGUa-CCAGUGUUUCA--------------AGUGc -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 100448 | 0.67 | 0.997544 |
Target: 5'- gGAGGGCgCA-GGUCAauggcccAAGUUCGCu -3' miRNA: 3'- gCUUCCG-GUaCCAGUgu-----UUCAAGUGc -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 77995 | 0.67 | 0.997544 |
Target: 5'- aCGAAGGCCGcGaUCGCGGGcGaUCACGu -3' miRNA: 3'- -GCUUCCGGUaCcAGUGUUU-CaAGUGC- -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 31750 | 0.67 | 0.997085 |
Target: 5'- aGggGcGCCuuUGGcUCGCAccgggauGGUUCGCGg -3' miRNA: 3'- gCuuC-CGGu-ACC-AGUGUu------UCAAGUGC- -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 150776 | 0.67 | 0.997085 |
Target: 5'- aGggGcGCCuuUGGcUCGCAccgggauGGUUCGCGg -3' miRNA: 3'- gCuuC-CGGu-ACC-AGUGUu------UCAAGUGC- -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 36317 | 0.67 | 0.996203 |
Target: 5'- -cGAGGCgAUGGuuagugagugucuucUCAgGAAGUUCAUGa -3' miRNA: 3'- gcUUCCGgUACC---------------AGUgUUUCAAGUGC- -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 65177 | 0.67 | 0.995951 |
Target: 5'- aCGAGGcGCCAUGaGUCAgcGcuUUCACGg -3' miRNA: 3'- -GCUUC-CGGUAC-CAGUguUucAAGUGC- -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 47565 | 0.67 | 0.995951 |
Target: 5'- aCGAAGGCCucgugccagauAUGGcUCGCGGGGa-CGCGu -3' miRNA: 3'- -GCUUCCGG-----------UACC-AGUGUUUCaaGUGC- -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 97672 | 0.68 | 0.99448 |
Target: 5'- ---cGGCCAUGGcCAgAGAGggCGCc -3' miRNA: 3'- gcuuCCGGUACCaGUgUUUCaaGUGc -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 88843 | 0.68 | 0.99448 |
Target: 5'- aGAGGGUgAcuaGGUUAuCGAGGUUCACa -3' miRNA: 3'- gCUUCCGgUa--CCAGU-GUUUCAAGUGc -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 1213 | 0.68 | 0.993597 |
Target: 5'- ---cGGCCAUGGcUGCGGGGUUgCACa -3' miRNA: 3'- gcuuCCGGUACCaGUGUUUCAA-GUGc -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 120240 | 0.68 | 0.993597 |
Target: 5'- ---cGGCCAUGGcUGCGGGGUUgCACa -3' miRNA: 3'- gcuuCCGGUACCaGUGUUUCAA-GUGc -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 12193 | 0.68 | 0.992605 |
Target: 5'- -cGAGG-CAUGGUCGCAGGGcgaugCGCGc -3' miRNA: 3'- gcUUCCgGUACCAGUGUUUCaa---GUGC- -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 29494 | 0.68 | 0.992605 |
Target: 5'- gGAGGGCCGcGGUCucu-AGUUC-CGa -3' miRNA: 3'- gCUUCCGGUaCCAGuguuUCAAGuGC- -5' |
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24372 | 5' | -49.3 | NC_005264.1 | + | 131220 | 0.68 | 0.992605 |
Target: 5'- -cGAGG-CAUGGUCGCAGGGcgaugCGCGc -3' miRNA: 3'- gcUUCCgGUACCAGUGUUUCaa---GUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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