Results 41 - 60 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 162822 | 0.66 | 0.855789 |
Target: 5'- gGGC-CGCGGcGUUAUgGCGUGCcgguGCGAa -3' miRNA: 3'- -UCGuGCGCC-UAAUGgCGCGCG----UGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 159539 | 0.67 | 0.848032 |
Target: 5'- cGGCGCGCGauc--CCGCGCGagcuCACGAc -3' miRNA: 3'- -UCGUGCGCcuaauGGCGCGC----GUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 20268 | 0.67 | 0.848032 |
Target: 5'- cGGCcuCGCGGAggggACCGUcuGCGCGCu-- -3' miRNA: 3'- -UCGu-GCGCCUaa--UGGCG--CGCGUGcuc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 84449 | 0.67 | 0.848032 |
Target: 5'- aAGC-UGUuccaGAUUGCCGCGUGCAuCGGGu -3' miRNA: 3'- -UCGuGCGc---CUAAUGGCGCGCGU-GCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 156903 | 0.67 | 0.848032 |
Target: 5'- cGC-CGCGGGUUcggGCCGUgguuagauaGCGCcucGCGAGu -3' miRNA: 3'- uCGuGCGCCUAA---UGGCG---------CGCG---UGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 36656 | 0.67 | 0.848032 |
Target: 5'- cGUGCGCGGAUggaccugGCCGCGaC-CACGu- -3' miRNA: 3'- uCGUGCGCCUAa------UGGCGC-GcGUGCuc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 135602 | 0.67 | 0.848032 |
Target: 5'- uAGagaGCGCaGAagGCCGCGCGCuauuCGAc -3' miRNA: 3'- -UCg--UGCGcCUaaUGGCGCGCGu---GCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 746 | 0.67 | 0.848032 |
Target: 5'- -aCACGCGaGAggucuccCCcCGCGCGCGAGa -3' miRNA: 3'- ucGUGCGC-CUaau----GGcGCGCGUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 119772 | 0.67 | 0.848032 |
Target: 5'- -aCACGCGaGAggucuccCCcCGCGCGCGAGa -3' miRNA: 3'- ucGUGCGC-CUaau----GGcGCGCGUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 85830 | 0.67 | 0.847245 |
Target: 5'- aAGCGCGCGcucagUACCgggucuuGCGCGCACu-- -3' miRNA: 3'- -UCGUGCGCcua--AUGG-------CGCGCGUGcuc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 104611 | 0.67 | 0.840887 |
Target: 5'- cGCGCaCGGGcaaaacauaucccaACCaGCGCGCGCGGGg -3' miRNA: 3'- uCGUGcGCCUaa------------UGG-CGCGCGUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 142029 | 0.67 | 0.840084 |
Target: 5'- cGCGCGauuGGcgUGCaugGCGUGCACGGu -3' miRNA: 3'- uCGUGCg--CCuaAUGg--CGCGCGUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 68025 | 0.67 | 0.840084 |
Target: 5'- gAGCGCcaaagaGCGGAUaACCGCuuccGUGCccgACGAGg -3' miRNA: 3'- -UCGUG------CGCCUAaUGGCG----CGCG---UGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 120487 | 0.67 | 0.840084 |
Target: 5'- cGGUGCGCGGAguagGUgGCGgGgGCGAGg -3' miRNA: 3'- -UCGUGCGCCUaa--UGgCGCgCgUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 132913 | 0.67 | 0.831953 |
Target: 5'- aGGCGCaGCGGcgUACCucccuaGCGCcgACGGGg -3' miRNA: 3'- -UCGUG-CGCCuaAUGGcg----CGCG--UGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 90651 | 0.67 | 0.831953 |
Target: 5'- gGGCGCGCGGAg-ACCGCauUGCugGcGg -3' miRNA: 3'- -UCGUGCGCCUaaUGGCGc-GCGugCuC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 55619 | 0.67 | 0.831953 |
Target: 5'- cGGCugGCGccgaAUgccaACCGCGCGCGCc-- -3' miRNA: 3'- -UCGugCGCc---UAa---UGGCGCGCGUGcuc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 126278 | 0.67 | 0.831953 |
Target: 5'- uGGUcCGCGGAggcggccaUGCCGCuuucggGCGCGCGGc -3' miRNA: 3'- -UCGuGCGCCUa-------AUGGCG------CGCGUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 69505 | 0.67 | 0.831953 |
Target: 5'- -cCACGCGGAUUGCgGgggaGUGC-CGGGg -3' miRNA: 3'- ucGUGCGCCUAAUGgCg---CGCGuGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 101652 | 0.67 | 0.83113 |
Target: 5'- aGGCGCGagucaaGGAUuuucuaucgucauUGCUGCGCgaGCGCGAa -3' miRNA: 3'- -UCGUGCg-----CCUA-------------AUGGCGCG--CGUGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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