miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 13421 0.68 0.7888
Target:  5'- cGGCGCGCGacc-GCCGC-CGC-CGAGa -3'
miRNA:   3'- -UCGUGCGCcuaaUGGCGcGCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 15735 0.7 0.693318
Target:  5'- cGGCACgGCGGccuggcuugAUUAUgUGUGCGCGCGAGc -3'
miRNA:   3'- -UCGUG-CGCC---------UAAUG-GCGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 16482 0.67 0.823645
Target:  5'- cAGC-CGCGGug-GCCuGCGgGguCGAGg -3'
miRNA:   3'- -UCGuGCGCCuaaUGG-CGCgCguGCUC- -5'
24373 3' -57.2 NC_005264.1 + 17286 0.69 0.732597
Target:  5'- gGGCAaacaugGUGGccacgGUUACCGCuaGCGCGAGa -3'
miRNA:   3'- -UCGUg-----CGCC-----UAAUGGCGcgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 17881 0.67 0.823645
Target:  5'- cGGCGgGCuGAUcUACgGCGCGCACa-- -3'
miRNA:   3'- -UCGUgCGcCUA-AUGgCGCGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 18074 0.66 0.873592
Target:  5'- gGGCGCGCGGGcaUuuaauucugcuguuaUGCCG-GCagaugGCGCGAGa -3'
miRNA:   3'- -UCGUGCGCCU--A---------------AUGGCgCG-----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 19425 0.74 0.457703
Target:  5'- aGGCGC-CGGGUgugGCCGCGgGgCGCGGGu -3'
miRNA:   3'- -UCGUGcGCCUAa--UGGCGCgC-GUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 20138 0.7 0.683352
Target:  5'- gGGC-CGCGGcucACCGCGCGCAa--- -3'
miRNA:   3'- -UCGuGCGCCuaaUGGCGCGCGUgcuc -5'
24373 3' -57.2 NC_005264.1 + 20225 0.7 0.683352
Target:  5'- cGCAUGUGGcc--CCGCGCGUgACGGGu -3'
miRNA:   3'- uCGUGCGCCuaauGGCGCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 20268 0.67 0.848032
Target:  5'- cGGCcuCGCGGAggggACCGUcuGCGCGCu-- -3'
miRNA:   3'- -UCGu-GCGCCUaa--UGGCG--CGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 20455 0.72 0.543095
Target:  5'- uAGC-CgGCGGAcaGCgGCGCGCAUGGGa -3'
miRNA:   3'- -UCGuG-CGCCUaaUGgCGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 25740 0.69 0.713091
Target:  5'- cGguCGCGGAgagGCCagugaugcucacGCGCGUugGGGa -3'
miRNA:   3'- uCguGCGCCUaa-UGG------------CGCGCGugCUC- -5'
24373 3' -57.2 NC_005264.1 + 28043 0.68 0.7888
Target:  5'- cGGCGCGCGcGAc-GCCGgguaaaaGCGCGCGGa -3'
miRNA:   3'- -UCGUGCGC-CUaaUGGCg------CGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 29247 0.72 0.562837
Target:  5'- gAGCACaGCGGAgacUGCgGCGCGCA-GAu -3'
miRNA:   3'- -UCGUG-CGCCUa--AUGgCGCGCGUgCUc -5'
24373 3' -57.2 NC_005264.1 + 30621 0.67 0.823645
Target:  5'- cGGCgGCGaCGGAU--CCGCGCGCagcGCGuAGg -3'
miRNA:   3'- -UCG-UGC-GCCUAauGGCGCGCG---UGC-UC- -5'
24373 3' -57.2 NC_005264.1 + 33946 0.66 0.863349
Target:  5'- uGGCGCGcCGGG--ACCGCGCcCGauaGGGg -3'
miRNA:   3'- -UCGUGC-GCCUaaUGGCGCGcGUg--CUC- -5'
24373 3' -57.2 NC_005264.1 + 34261 0.71 0.612901
Target:  5'- uGCGCGCGGuaauCCGCGUGCuGCGc- -3'
miRNA:   3'- uCGUGCGCCuaauGGCGCGCG-UGCuc -5'
24373 3' -57.2 NC_005264.1 + 35985 0.69 0.722882
Target:  5'- gGGgGCGCGGAgagcgaaaCGCGCaGCgACGAGg -3'
miRNA:   3'- -UCgUGCGCCUaaug----GCGCG-CG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 36526 0.71 0.602833
Target:  5'- aGGCggGCGCaGGAgccaucgGCCGCGCGCcCGAa -3'
miRNA:   3'- -UCG--UGCG-CCUaa-----UGGCGCGCGuGCUc -5'
24373 3' -57.2 NC_005264.1 + 36656 0.67 0.848032
Target:  5'- cGUGCGCGGAUggaccugGCCGCGaC-CACGu- -3'
miRNA:   3'- uCGUGCGCCUAa------UGGCGC-GcGUGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.