miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 746 0.67 0.848032
Target:  5'- -aCACGCGaGAggucuccCCcCGCGCGCGAGa -3'
miRNA:   3'- ucGUGCGC-CUaau----GGcGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 1146 0.66 0.884793
Target:  5'- cGCACG-GGAcgauccgGCCGCcagucugccgGCGCGCGAu -3'
miRNA:   3'- uCGUGCgCCUaa-----UGGCG----------CGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 2830 0.69 0.732597
Target:  5'- gGGUugGCGGAggGCCGguCGCGCucGCGc- -3'
miRNA:   3'- -UCGugCGCCUaaUGGC--GCGCG--UGCuc -5'
24373 3' -57.2 NC_005264.1 + 3302 0.72 0.552939
Target:  5'- gAGCucGCGCGGG--AUCGCGCGCcgugcaagcggaGCGAGa -3'
miRNA:   3'- -UCG--UGCGCCUaaUGGCGCGCG------------UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 3410 0.67 0.818579
Target:  5'- cGGUGCGCGGGggagggacguaggGCCGCGCcCGCGc- -3'
miRNA:   3'- -UCGUGCGCCUaa-----------UGGCGCGcGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 3611 0.7 0.643162
Target:  5'- cGC-CGCGGGggGCCGCGaGgGCGGGc -3'
miRNA:   3'- uCGuGCGCCUaaUGGCGCgCgUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 3689 0.66 0.873592
Target:  5'- gGGCcugGCGCGGAaagggcgcacaguacUUGCCGCGgGCGgGc- -3'
miRNA:   3'- -UCG---UGCGCCU---------------AAUGGCGCgCGUgCuc -5'
24373 3' -57.2 NC_005264.1 + 4246 0.68 0.80653
Target:  5'- ---cUGCGGAgccucUUGCCGcCGCGCAgCGAGu -3'
miRNA:   3'- ucguGCGCCU-----AAUGGC-GCGCGU-GCUC- -5'
24373 3' -57.2 NC_005264.1 + 4748 0.68 0.761198
Target:  5'- cGGCGucCGgGGGUggACCGC-CGCGCGAa -3'
miRNA:   3'- -UCGU--GCgCCUAa-UGGCGcGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 5529 0.68 0.797738
Target:  5'- cAGC-CGCGGcgUcUCGCGCGgaGCGGGu -3'
miRNA:   3'- -UCGuGCGCCuaAuGGCGCGCg-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 5997 0.69 0.722882
Target:  5'- cAGCGCgGCGGuc-GCUGUGCGCACc-- -3'
miRNA:   3'- -UCGUG-CGCCuaaUGGCGCGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 6149 0.66 0.875022
Target:  5'- cGCGCGCccgucgcgcAUCGCGUGCACGAu -3'
miRNA:   3'- uCGUGCGccuaa----UGGCGCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 6448 0.66 0.863349
Target:  5'- cGCugGCGGAgaacuccucgGCgGCGCG-GCGAa -3'
miRNA:   3'- uCGugCGCCUaa--------UGgCGCGCgUGCUc -5'
24373 3' -57.2 NC_005264.1 + 6726 0.68 0.7888
Target:  5'- uAGCGuCGCGGuacuCCGCGgcgugGCGCGGGa -3'
miRNA:   3'- -UCGU-GCGCCuaauGGCGCg----CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 6909 0.77 0.30469
Target:  5'- cAGCGCGCGGcUUuCCGUGgGCGCGAu -3'
miRNA:   3'- -UCGUGCGCCuAAuGGCGCgCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 7065 0.66 0.870707
Target:  5'- cGGCGC-CGGccggcGCCGuCGCGCuGCGGGg -3'
miRNA:   3'- -UCGUGcGCCuaa--UGGC-GCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 8317 0.69 0.751764
Target:  5'- cGGCACGCuuGUUugCGCGCgGCAUGuGc -3'
miRNA:   3'- -UCGUGCGccUAAugGCGCG-CGUGCuC- -5'
24373 3' -57.2 NC_005264.1 + 9923 0.68 0.7888
Target:  5'- cGCGacUGCGGGcuUUGCgGCGCGC-UGAGa -3'
miRNA:   3'- uCGU--GCGCCU--AAUGgCGCGCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 13194 0.68 0.7888
Target:  5'- uGCGCGCGGAUccgucgccGCCGCcGuCGC-CGGGc -3'
miRNA:   3'- uCGUGCGCCUAa-------UGGCG-C-GCGuGCUC- -5'
24373 3' -57.2 NC_005264.1 + 13296 0.66 0.875734
Target:  5'- cGGguCGUGGAgcuccccggaggacgGCCGCGCggaGCAgGAGg -3'
miRNA:   3'- -UCguGCGCCUaa-------------UGGCGCG---CGUgCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.