miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 128581 1.09 0.002399
Target:  5'- cAGCACGCGGAUUACCGCGCGCACGAGg -3'
miRNA:   3'- -UCGUGCGCCUAAUGGCGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 76131 0.79 0.234542
Target:  5'- uGUACGCGGAcggcggcaaagACCGCGCGCgGCGAGu -3'
miRNA:   3'- uCGUGCGCCUaa---------UGGCGCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 138542 0.78 0.265272
Target:  5'- cGGCAcCGUGGAUguaACCGCGUGCgGCGGGa -3'
miRNA:   3'- -UCGU-GCGCCUAa--UGGCGCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 66541 0.77 0.291071
Target:  5'- cAGCaACGCGGAc-GCCGagGCGCACGAGc -3'
miRNA:   3'- -UCG-UGCGCCUaaUGGCg-CGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 6909 0.77 0.30469
Target:  5'- cAGCGCGCGGcUUuCCGUGgGCGCGAu -3'
miRNA:   3'- -UCGUGCGCCuAAuGGCGCgCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 120974 0.75 0.396518
Target:  5'- cAGCGCGCGGAgcuggaaaagUUACUGCGCGUcaACGu- -3'
miRNA:   3'- -UCGUGCGCCU----------AAUGGCGCGCG--UGCuc -5'
24373 3' -57.2 NC_005264.1 + 123483 0.74 0.4221
Target:  5'- gGGCAUGCGGug-GCCGCGCGguUGcuGGg -3'
miRNA:   3'- -UCGUGCGCCuaaUGGCGCGCguGC--UC- -5'
24373 3' -57.2 NC_005264.1 + 144989 0.74 0.457703
Target:  5'- -uCACGCGGucgaACaGCGCGCGCGAGa -3'
miRNA:   3'- ucGUGCGCCuaa-UGgCGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 65624 0.74 0.457703
Target:  5'- cGGCuCGUGGGUacCCGCGCGCGCa-- -3'
miRNA:   3'- -UCGuGCGCCUAauGGCGCGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 19425 0.74 0.457703
Target:  5'- aGGCGC-CGGGUgugGCCGCGgGgCGCGGGu -3'
miRNA:   3'- -UCGUGcGCCUAa--UGGCGCgC-GUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 45543 0.74 0.466853
Target:  5'- cGCACGCGGAgaGCgGCaucGCGCACGc- -3'
miRNA:   3'- uCGUGCGCCUaaUGgCG---CGCGUGCuc -5'
24373 3' -57.2 NC_005264.1 + 111045 0.73 0.489188
Target:  5'- uGGCucGCGCGGAcucgccggacgaagUGCCGC-CGCGCGAGc -3'
miRNA:   3'- -UCG--UGCGCCUa-------------AUGGCGcGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 71613 0.73 0.504352
Target:  5'- gAGCuACGCGGGcUAUCGCGCgaauGCGCGGa -3'
miRNA:   3'- -UCG-UGCGCCUaAUGGCGCG----CGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 96333 0.73 0.523587
Target:  5'- gGGCACGCucgcugUACCGCGCcaucgccgGCACGGGa -3'
miRNA:   3'- -UCGUGCGccua--AUGGCGCG--------CGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 155931 0.73 0.523587
Target:  5'- cGCGCccaCGGAaaGCCGCGCGCugGGa -3'
miRNA:   3'- uCGUGc--GCCUaaUGGCGCGCGugCUc -5'
24373 3' -57.2 NC_005264.1 + 86703 0.72 0.533309
Target:  5'- cGCGCGCGGucuUUGCCGCcguccGCGUACa-- -3'
miRNA:   3'- uCGUGCGCCu--AAUGGCG-----CGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 20455 0.72 0.543095
Target:  5'- uAGC-CgGCGGAcaGCgGCGCGCAUGGGa -3'
miRNA:   3'- -UCGuG-CGCCUaaUGgCGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 3302 0.72 0.552939
Target:  5'- gAGCucGCGCGGG--AUCGCGCGCcgugcaagcggaGCGAGa -3'
miRNA:   3'- -UCG--UGCGCCUaaUGGCGCGCG------------UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 48096 0.72 0.552939
Target:  5'- cGGcCGCGCGGGUU-CUGCacGCGCGCGGc -3'
miRNA:   3'- -UC-GUGCGCCUAAuGGCG--CGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 29247 0.72 0.562837
Target:  5'- gAGCACaGCGGAgacUGCgGCGCGCA-GAu -3'
miRNA:   3'- -UCGUG-CGCCUa--AUGgCGCGCGUgCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.