miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24373 3' -57.2 NC_005264.1 + 15735 0.7 0.693318
Target:  5'- cGGCACgGCGGccuggcuugAUUAUgUGUGCGCGCGAGc -3'
miRNA:   3'- -UCGUG-CGCC---------UAAUG-GCGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 34261 0.71 0.612901
Target:  5'- uGCGCGCGGuaauCCGCGUGCuGCGc- -3'
miRNA:   3'- uCGUGCGCCuaauGGCGCGCG-UGCuc -5'
24373 3' -57.2 NC_005264.1 + 72190 0.71 0.612901
Target:  5'- cAGCaAUGCGGucu-CCGCGCGCccuuCGGGg -3'
miRNA:   3'- -UCG-UGCGCCuaauGGCGCGCGu---GCUC- -5'
24373 3' -57.2 NC_005264.1 + 133692 0.71 0.622984
Target:  5'- cGC-CGCGGuccUUGCCGcCGCGCACuGGu -3'
miRNA:   3'- uCGuGCGCCu--AAUGGC-GCGCGUGcUC- -5'
24373 3' -57.2 NC_005264.1 + 122638 0.7 0.643162
Target:  5'- cGC-CGCGGGggGCCGCGaGgGCGGGc -3'
miRNA:   3'- uCGuGCGCCUaaUGGCGCgCgUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 42041 0.7 0.682353
Target:  5'- cGCACGCGGccuauccaaucgcGUUGCC-CGCgGCGCGuGg -3'
miRNA:   3'- uCGUGCGCC-------------UAAUGGcGCG-CGUGCuC- -5'
24373 3' -57.2 NC_005264.1 + 20138 0.7 0.683352
Target:  5'- gGGC-CGCGGcucACCGCGCGCAa--- -3'
miRNA:   3'- -UCGuGCGCCuaaUGGCGCGCGUgcuc -5'
24373 3' -57.2 NC_005264.1 + 20225 0.7 0.683352
Target:  5'- cGCAUGUGGcc--CCGCGCGUgACGGGu -3'
miRNA:   3'- uCGUGCGCCuaauGGCGCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 72554 0.7 0.683352
Target:  5'- aAGCACGCGGucaaccgcaacuAUUucuucgauaugGCUGgGCGCGCGAu -3'
miRNA:   3'- -UCGUGCGCC------------UAA-----------UGGCgCGCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 36526 0.71 0.602833
Target:  5'- aGGCggGCGCaGGAgccaucgGCCGCGCGCcCGAa -3'
miRNA:   3'- -UCG--UGCG-CCUaa-----UGGCGCGCGuGCUc -5'
24373 3' -57.2 NC_005264.1 + 157619 0.71 0.599816
Target:  5'- aGGC-CGCGGAagaagagcuucgccUcGCCGCG-GCGCGAGa -3'
miRNA:   3'- -UCGuGCGCCU--------------AaUGGCGCgCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 3302 0.72 0.552939
Target:  5'- gAGCucGCGCGGG--AUCGCGCGCcgugcaagcggaGCGAGa -3'
miRNA:   3'- -UCG--UGCGCCUaaUGGCGCGCG------------UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 138542 0.78 0.265272
Target:  5'- cGGCAcCGUGGAUguaACCGCGUGCgGCGGGa -3'
miRNA:   3'- -UCGU-GCGCCUAa--UGGCGCGCG-UGCUC- -5'
24373 3' -57.2 NC_005264.1 + 6909 0.77 0.30469
Target:  5'- cAGCGCGCGGcUUuCCGUGgGCGCGAu -3'
miRNA:   3'- -UCGUGCGCCuAAuGGCGCgCGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 144989 0.74 0.457703
Target:  5'- -uCACGCGGucgaACaGCGCGCGCGAGa -3'
miRNA:   3'- ucGUGCGCCuaa-UGgCGCGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 19425 0.74 0.457703
Target:  5'- aGGCGC-CGGGUgugGCCGCGgGgCGCGGGu -3'
miRNA:   3'- -UCGUGcGCCUAa--UGGCGCgC-GUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 65624 0.74 0.457703
Target:  5'- cGGCuCGUGGGUacCCGCGCGCGCa-- -3'
miRNA:   3'- -UCGuGCGCCUAauGGCGCGCGUGcuc -5'
24373 3' -57.2 NC_005264.1 + 111045 0.73 0.489188
Target:  5'- uGGCucGCGCGGAcucgccggacgaagUGCCGC-CGCGCGAGc -3'
miRNA:   3'- -UCG--UGCGCCUa-------------AUGGCGcGCGUGCUC- -5'
24373 3' -57.2 NC_005264.1 + 71613 0.73 0.504352
Target:  5'- gAGCuACGCGGGcUAUCGCGCgaauGCGCGGa -3'
miRNA:   3'- -UCG-UGCGCCUaAUGGCGCG----CGUGCUc -5'
24373 3' -57.2 NC_005264.1 + 20455 0.72 0.543095
Target:  5'- uAGC-CgGCGGAcaGCgGCGCGCAUGGGa -3'
miRNA:   3'- -UCGuG-CGCCUaaUGgCGCGCGUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.