Results 1 - 20 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24373 | 3' | -57.2 | NC_005264.1 | + | 132323 | 0.66 | 0.875734 |
Target: 5'- cGGguCGUGGAgcuccccggaggacgGCCGCGCggaGCAgGAGg -3' miRNA: 3'- -UCguGCGCCUaa-------------UGGCGCG---CGUgCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 18074 | 0.66 | 0.873592 |
Target: 5'- gGGCGCGCGGGcaUuuaauucugcuguuaUGCCG-GCagaugGCGCGAGa -3' miRNA: 3'- -UCGUGCGCCU--A---------------AUGGCgCG-----CGUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 126092 | 0.66 | 0.870707 |
Target: 5'- cGGCGC-CGGccggcGCCGuCGCGCuGCGGGg -3' miRNA: 3'- -UCGUGcGCCuaa--UGGC-GCGCG-UGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 41389 | 0.66 | 0.855789 |
Target: 5'- uGUACGCGuag-GCCGCGCGCugugucuCGGa -3' miRNA: 3'- uCGUGCGCcuaaUGGCGCGCGu------GCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 87747 | 0.66 | 0.891512 |
Target: 5'- cGGCGC-CGGcgccUGCCGCaGCGcCGCGAa -3' miRNA: 3'- -UCGUGcGCCua--AUGGCG-CGC-GUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 99587 | 0.66 | 0.877856 |
Target: 5'- aAGCGCaGCGGcaUGCUGgGCGCuuCGAu -3' miRNA: 3'- -UCGUG-CGCCuaAUGGCgCGCGu-GCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 54338 | 0.66 | 0.855789 |
Target: 5'- aAGCGCGCGGcgUuuauggcgaGCCuuagaaGCGuCGCGCGGc -3' miRNA: 3'- -UCGUGCGCCuaA---------UGG------CGC-GCGUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 157356 | 0.66 | 0.863349 |
Target: 5'- gGGUugGCGGGcccugGCCGUGaUGCugGGc -3' miRNA: 3'- -UCGugCGCCUaa---UGGCGC-GCGugCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 157185 | 0.66 | 0.884793 |
Target: 5'- cAGCAUGCGugcGAcUACCGCcGCGCuguGGGg -3' miRNA: 3'- -UCGUGCGC---CUaAUGGCG-CGCGug-CUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 125176 | 0.66 | 0.875022 |
Target: 5'- cGCGCGCccgucgcgcAUCGCGUGCACGAu -3' miRNA: 3'- uCGUGCGccuaa----UGGCGCGCGUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 66873 | 0.66 | 0.870707 |
Target: 5'- cGCGCGCGGAgagcaGCCGCGa-CACc-- -3' miRNA: 3'- uCGUGCGCCUaa---UGGCGCgcGUGcuc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 58738 | 0.66 | 0.891512 |
Target: 5'- gGGCAucCGCGGcc-GCCGCuGCGCuaucaGAGg -3' miRNA: 3'- -UCGU--GCGCCuaaUGGCG-CGCGug---CUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 159371 | 0.66 | 0.891512 |
Target: 5'- uGCcacauCGUGGAUgcggcACCGgGCGcCACGGGc -3' miRNA: 3'- uCGu----GCGCCUAa----UGGCgCGC-GUGCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 120173 | 0.66 | 0.884793 |
Target: 5'- cGCACG-GGAcgauccgGCCGCcagucugccgGCGCGCGAu -3' miRNA: 3'- uCGUGCgCCUaa-----UGGCG----------CGCGUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 87603 | 0.66 | 0.877856 |
Target: 5'- cGGCaaACGCGGAcgaccugGCCGCGC-CA-GAGg -3' miRNA: 3'- -UCG--UGCGCCUaa-----UGGCGCGcGUgCUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 108607 | 0.66 | 0.891512 |
Target: 5'- uGGCGCGCGGG--GCCGCcuCGaCACa-- -3' miRNA: 3'- -UCGUGCGCCUaaUGGCGc-GC-GUGcuc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 152973 | 0.66 | 0.863349 |
Target: 5'- uGGCGCGcCGGG--ACCGCGCcCGauaGGGg -3' miRNA: 3'- -UCGUGC-GCCUaaUGGCGCGcGUg--CUC- -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 3689 | 0.66 | 0.873592 |
Target: 5'- gGGCcugGCGCGGAaagggcgcacaguacUUGCCGCGgGCGgGc- -3' miRNA: 3'- -UCG---UGCGCCU---------------AAUGGCGCgCGUgCuc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 125475 | 0.66 | 0.863349 |
Target: 5'- cGCugGCGGAgaacuccucgGCgGCGCG-GCGAa -3' miRNA: 3'- uCGugCGCCUaa--------UGgCGCGCgUGCUc -5' |
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24373 | 3' | -57.2 | NC_005264.1 | + | 156610 | 0.66 | 0.884793 |
Target: 5'- cGGCAagucuCGCGGcg-GCCGCG-GCGgGGGg -3' miRNA: 3'- -UCGU-----GCGCCuaaUGGCGCgCGUgCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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