miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24374 3' -60.6 NC_005264.1 + 162465 0.67 0.639833
Target:  5'- cGGCGCUGCCCCCCAaagaccaauaaggucUggcaugUCCCGCaagGggUu -3'
miRNA:   3'- -CUGUGGCGGGGGGU---------------A------AGGGCGg--CuuG- -5'
24374 3' -60.6 NC_005264.1 + 159946 0.67 0.635875
Target:  5'- -uCGCCGUCgCCCuc-CCCGCCGcGCc -3'
miRNA:   3'- cuGUGGCGGgGGGuaaGGGCGGCuUG- -5'
24374 3' -60.6 NC_005264.1 + 40919 0.67 0.635875
Target:  5'- -uCGCCGUCgCCCuc-CCCGCCGcGCc -3'
miRNA:   3'- cuGUGGCGGgGGGuaaGGGCGGCuUG- -5'
24374 3' -60.6 NC_005264.1 + 154533 0.67 0.635875
Target:  5'- cGACGCCGCggcgcaggugCCCCCGUcgCCCa-CGGGCg -3'
miRNA:   3'- -CUGUGGCG----------GGGGGUAa-GGGcgGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 125724 0.67 0.635875
Target:  5'- aGACgGCCGCCucgCCCUcgUCCUGCCa--- -3'
miRNA:   3'- -CUG-UGGCGG---GGGGuaAGGGCGGcuug -5'
24374 3' -60.6 NC_005264.1 + 35506 0.67 0.635875
Target:  5'- cGACGCCGCggcgcaggugCCCCCGUcgCCCa-CGGGCg -3'
miRNA:   3'- -CUGUGGCG----------GGGGGUAa-GGGcgGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 16970 0.67 0.634886
Target:  5'- uGCACC-CaCCCCCGUUCgcaaacuCCGCCGGu- -3'
miRNA:   3'- cUGUGGcG-GGGGGUAAG-------GGCGGCUug -5'
24374 3' -60.6 NC_005264.1 + 129210 0.68 0.62598
Target:  5'- cGACcaACCGUCgCCgCCAaUCUgGCCGAACu -3'
miRNA:   3'- -CUG--UGGCGG-GG-GGUaAGGgCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 110783 0.68 0.62598
Target:  5'- aGCAcCCGCCUUCCAUacucaggacUCCCGCuuCGGGCc -3'
miRNA:   3'- cUGU-GGCGGGGGGUA---------AGGGCG--GCUUG- -5'
24374 3' -60.6 NC_005264.1 + 23396 0.68 0.616089
Target:  5'- --gGCCGCCCUCUugugaCgGCCGAGCa -3'
miRNA:   3'- cugUGGCGGGGGGuaag-GgCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 151483 0.68 0.616089
Target:  5'- -cCACCGCaugCCCCAgauggcagUUCCuCGCCaGAACg -3'
miRNA:   3'- cuGUGGCGg--GGGGU--------AAGG-GCGG-CUUG- -5'
24374 3' -60.6 NC_005264.1 + 111484 0.68 0.616089
Target:  5'- aGACGCUGCgCCCU--UCCUGUCGGcgGCg -3'
miRNA:   3'- -CUGUGGCGgGGGGuaAGGGCGGCU--UG- -5'
24374 3' -60.6 NC_005264.1 + 83418 0.68 0.616089
Target:  5'- cGCACCGCCCaCgCugggUUCCGCCGcGGCc -3'
miRNA:   3'- cUGUGGCGGG-GgGua--AGGGCGGC-UUG- -5'
24374 3' -60.6 NC_005264.1 + 32456 0.68 0.616089
Target:  5'- -cCACCGCaugCCCCAgauggcagUUCCuCGCCaGAACg -3'
miRNA:   3'- cuGUGGCGg--GGGGU--------AAGG-GCGG-CUUG- -5'
24374 3' -60.6 NC_005264.1 + 68237 0.68 0.616089
Target:  5'- cGCACCGCCaagCCAUgCCCGCgccgCGGGCg -3'
miRNA:   3'- cUGUGGCGGgg-GGUAaGGGCG----GCUUG- -5'
24374 3' -60.6 NC_005264.1 + 107843 0.68 0.596348
Target:  5'- -uCACCGUCaCCUCGUUCuuGCCGccGCg -3'
miRNA:   3'- cuGUGGCGG-GGGGUAAGggCGGCu-UG- -5'
24374 3' -60.6 NC_005264.1 + 68315 0.68 0.596348
Target:  5'- cGGCGCCGCUgCCC--UCCCacgugGCCGAcgGCu -3'
miRNA:   3'- -CUGUGGCGGgGGGuaAGGG-----CGGCU--UG- -5'
24374 3' -60.6 NC_005264.1 + 20903 0.68 0.586511
Target:  5'- -gUACCGCCCaCCCGcUCCU-CUGAACa -3'
miRNA:   3'- cuGUGGCGGG-GGGUaAGGGcGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 77934 0.68 0.586511
Target:  5'- uGGCucuucCCGCCCUCCcgUCCUGCgCGGc- -3'
miRNA:   3'- -CUGu----GGCGGGGGGuaAGGGCG-GCUug -5'
24374 3' -60.6 NC_005264.1 + 47115 0.69 0.557209
Target:  5'- -uCGCCGCgCCCCCua-CCaUGCCGGAUg -3'
miRNA:   3'- cuGUGGCG-GGGGGuaaGG-GCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.