miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24374 5' -55.4 NC_005264.1 + 143891 0.68 0.828259
Target:  5'- cGGCGgGCGCAAcgucgauUGUGGGACGu -3'
miRNA:   3'- uUCGCgCGCGUUuauc---ACGCCCUGCu -5'
24374 5' -55.4 NC_005264.1 + 146008 0.67 0.860797
Target:  5'- cGGCGUGCGCGuuAUGG-GCucGGGCGAc -3'
miRNA:   3'- uUCGCGCGCGUu-UAUCaCGc-CCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 95339 0.69 0.801913
Target:  5'- cGGGCGC-CGCGAAacGgacucgGCGGGGCGGc -3'
miRNA:   3'- -UUCGCGcGCGUUUauCa-----CGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 95467 0.7 0.754977
Target:  5'- cGGCGgGCGCAGcgAGcGCGGG-CGc -3'
miRNA:   3'- uUCGCgCGCGUUuaUCaCGCCCuGCu -5'
24374 5' -55.4 NC_005264.1 + 155266 0.7 0.74522
Target:  5'- cAGCG-GCGCgGGGUAGgcgGCGgGGACGAu -3'
miRNA:   3'- uUCGCgCGCG-UUUAUCa--CGC-CCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 154928 0.7 0.74522
Target:  5'- -cGCGCGCGUugcuagccAGAgcGUGgGGGACGu -3'
miRNA:   3'- uuCGCGCGCG--------UUUauCACgCCCUGCu -5'
24374 5' -55.4 NC_005264.1 + 29262 0.7 0.74522
Target:  5'- -uGCgGCGCGCAGAUuguuggacuGUGCGcGGGCGc -3'
miRNA:   3'- uuCG-CGCGCGUUUAu--------CACGC-CCUGCu -5'
24374 5' -55.4 NC_005264.1 + 94602 0.7 0.705269
Target:  5'- cGGCGCGgGCAuggcuuggcGGUGCGGcGugGAc -3'
miRNA:   3'- uUCGCGCgCGUuua------UCACGCC-CugCU- -5'
24374 5' -55.4 NC_005264.1 + 153381 0.7 0.704255
Target:  5'- gAAGCGuUGCGCGAggggaaaccgcuaAUGGUGCaGGACGu -3'
miRNA:   3'- -UUCGC-GCGCGUU-------------UAUCACGcCCUGCu -5'
24374 5' -55.4 NC_005264.1 + 54249 0.72 0.612557
Target:  5'- -cGCGCGCcaacguguCGAGUGGgaGCGGGGCGAg -3'
miRNA:   3'- uuCGCGCGc-------GUUUAUCa-CGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 2612 0.68 0.819648
Target:  5'- aAGGCGCGaGcCGAGcAG-GCGGGGCGGa -3'
miRNA:   3'- -UUCGCGCgC-GUUUaUCaCGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 67264 0.68 0.831652
Target:  5'- aAAGCGCGCugugguauagacgacGCGAAUGG-GCGGGuaucaGAa -3'
miRNA:   3'- -UUCGCGCG---------------CGUUUAUCaCGCCCug---CU- -5'
24374 5' -55.4 NC_005264.1 + 128376 1.07 0.004127
Target:  5'- gAAGCGCGCGCAAAUAGUGCGGGACGAg -3'
miRNA:   3'- -UUCGCGCGCGUUUAUCACGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 50818 0.66 0.926697
Target:  5'- -cGCGCGCGCAGGUu-UGCGuguaGACGu -3'
miRNA:   3'- uuCGCGCGCGUUUAucACGCc---CUGCu -5'
24374 5' -55.4 NC_005264.1 + 100935 0.66 0.915419
Target:  5'- uAGCGCGCGCcguGAUAGacgGCaGGAUu- -3'
miRNA:   3'- uUCGCGCGCGu--UUAUCa--CGcCCUGcu -5'
24374 5' -55.4 NC_005264.1 + 109824 0.66 0.903168
Target:  5'- -cGUGCGUGCAGGU--UGCGGaGGCa- -3'
miRNA:   3'- uuCGCGCGCGUUUAucACGCC-CUGcu -5'
24374 5' -55.4 NC_005264.1 + 115243 0.66 0.896683
Target:  5'- gAAGgGCGUGuCAAAUGGccUGCGGGGa-- -3'
miRNA:   3'- -UUCgCGCGC-GUUUAUC--ACGCCCUgcu -5'
24374 5' -55.4 NC_005264.1 + 43882 0.66 0.896683
Target:  5'- cGAGCGCG-GCAAAgggGGcGCcGGaGACGAu -3'
miRNA:   3'- -UUCGCGCgCGUUUa--UCaCG-CC-CUGCU- -5'
24374 5' -55.4 NC_005264.1 + 60032 0.68 0.844924
Target:  5'- gAGGCGC-CGCA--UGGUGgGGGAaaaGAa -3'
miRNA:   3'- -UUCGCGcGCGUuuAUCACgCCCUg--CU- -5'
24374 5' -55.4 NC_005264.1 + 84927 0.66 0.896683
Target:  5'- uGGCuGCGCGCucuguuGUAGUGUGGcGcCGGg -3'
miRNA:   3'- uUCG-CGCGCGuu----UAUCACGCC-CuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.