miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24374 5' -55.4 NC_005264.1 + 15761 0.66 0.926697
Target:  5'- -uGUGCGCGCGAgcGUGGcucCGGG-CGAg -3'
miRNA:   3'- uuCGCGCGCGUU--UAUCac-GCCCuGCU- -5'
24374 5' -55.4 NC_005264.1 + 135570 0.66 0.90253
Target:  5'- gAAGcCGCGCGUcgcucgcgacuacGGGUGG-GuCGGGACGGu -3'
miRNA:   3'- -UUC-GCGCGCG-------------UUUAUCaC-GCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 146772 0.66 0.903168
Target:  5'- cAAGCGcCGCGCGgcGGUucucGGUGCGGcgguGugGAu -3'
miRNA:   3'- -UUCGC-GCGCGU--UUA----UCACGCC----CugCU- -5'
24374 5' -55.4 NC_005264.1 + 79805 0.66 0.909415
Target:  5'- ---aGUGCGCAAcgAGgccccUGCGGcGACGAa -3'
miRNA:   3'- uucgCGCGCGUUuaUC-----ACGCC-CUGCU- -5'
24374 5' -55.4 NC_005264.1 + 145253 0.66 0.909415
Target:  5'- aAAGCGCGCGUAGAUgauuGGUauuGCuGGcACGGg -3'
miRNA:   3'- -UUCGCGCGCGUUUA----UCA---CGcCC-UGCU- -5'
24374 5' -55.4 NC_005264.1 + 3666 0.66 0.915419
Target:  5'- uGGGgGCGacugGCAu-UGGUGCGGGGCc- -3'
miRNA:   3'- -UUCgCGCg---CGUuuAUCACGCCCUGcu -5'
24374 5' -55.4 NC_005264.1 + 96533 0.66 0.915419
Target:  5'- -cGC-CGCGCAAcaggAGUGCaGGGACc- -3'
miRNA:   3'- uuCGcGCGCGUUua--UCACG-CCCUGcu -5'
24374 5' -55.4 NC_005264.1 + 70590 0.66 0.915419
Target:  5'- aGAGCGCGCuugGCGAGgcgGGccuucagagcaUGCuGGACGAg -3'
miRNA:   3'- -UUCGCGCG---CGUUUa--UC-----------ACGcCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 93945 0.66 0.92118
Target:  5'- --uCGCGCGCAGcggAGUGUGGaaaGCGAu -3'
miRNA:   3'- uucGCGCGCGUUua-UCACGCCc--UGCU- -5'
24374 5' -55.4 NC_005264.1 + 22719 0.67 0.882299
Target:  5'- -uGCgGCGCGCAAgcGUgugucugcugcccGGUGCuGGGCGAa -3'
miRNA:   3'- uuCG-CGCGCGUU--UA-------------UCACGcCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 87528 0.67 0.875825
Target:  5'- uGGCGCGCgGCAGAUGcugcaGCGuGGGCGu -3'
miRNA:   3'- uUCGCGCG-CGUUUAUca---CGC-CCUGCu -5'
24374 5' -55.4 NC_005264.1 + 146008 0.67 0.860797
Target:  5'- cGGCGUGCGCGuuAUGG-GCucGGGCGAc -3'
miRNA:   3'- uUCGCGCGCGUu-UAUCaCGc-CCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 50563 0.71 0.653973
Target:  5'- uAGGCGCGCGC-----GUGCGGGAa-- -3'
miRNA:   3'- -UUCGCGCGCGuuuauCACGCCCUgcu -5'
24374 5' -55.4 NC_005264.1 + 106719 0.69 0.799196
Target:  5'- --uCGCGCGCcuaguggucgacaaGGAUGGUGCGGGG-GAg -3'
miRNA:   3'- uucGCGCGCG--------------UUUAUCACGCCCUgCU- -5'
24374 5' -55.4 NC_005264.1 + 23944 0.69 0.801913
Target:  5'- -cGCGC-CGCcGAUGGguaUGUGGGGCGGu -3'
miRNA:   3'- uuCGCGcGCGuUUAUC---ACGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 136365 0.68 0.810864
Target:  5'- uGGGCGCugccgGCGCGAAUAGcgcUGUGGaGCGAu -3'
miRNA:   3'- -UUCGCG-----CGCGUUUAUC---ACGCCcUGCU- -5'
24374 5' -55.4 NC_005264.1 + 77295 0.68 0.814398
Target:  5'- uGGGUGCGCgGCAGAUAGUGUcucguucaacgcucaGuGGAUGGa -3'
miRNA:   3'- -UUCGCGCG-CGUUUAUCACG---------------C-CCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 25153 0.68 0.818778
Target:  5'- -cGCGCGCguuugcgGCAGggGGUgGCGGGGCa- -3'
miRNA:   3'- uuCGCGCG-------CGUUuaUCA-CGCCCUGcu -5'
24374 5' -55.4 NC_005264.1 + 121639 0.68 0.819648
Target:  5'- aAGGCGCGaGcCGAGcAG-GCGGGGCGGa -3'
miRNA:   3'- -UUCGCGCgC-GUUUaUCaCGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 143891 0.68 0.828259
Target:  5'- cGGCGgGCGCAAcgucgauUGUGGGACGu -3'
miRNA:   3'- uUCGCgCGCGUUuauc---ACGCCCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.