Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24374 | 5' | -55.4 | NC_005264.1 | + | 128376 | 1.07 | 0.004127 |
Target: 5'- gAAGCGCGCGCAAAUAGUGCGGGACGAg -3' miRNA: 3'- -UUCGCGCGCGUUUAUCACGCCCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 46588 | 0.75 | 0.42252 |
Target: 5'- -cGCGCGUGCGGAggcucugucccUGCGGGGCGAg -3' miRNA: 3'- uuCGCGCGCGUUUauc--------ACGCCCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 128595 | 0.75 | 0.435131 |
Target: 5'- --cCGCGCGCAcg-AG-GCGGGACGAa -3' miRNA: 3'- uucGCGCGCGUuuaUCaCGCCCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 120487 | 0.73 | 0.581624 |
Target: 5'- cGGUGCGCG-GAGUAGgugGCGgGGGCGAg -3' miRNA: 3'- uUCGCGCGCgUUUAUCa--CGC-CCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 54249 | 0.72 | 0.612557 |
Target: 5'- -cGCGCGCcaacguguCGAGUGGgaGCGGGGCGAg -3' miRNA: 3'- uuCGCGCGc-------GUUUAUCa-CGCCCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 50563 | 0.71 | 0.653973 |
Target: 5'- uAGGCGCGCGC-----GUGCGGGAa-- -3' miRNA: 3'- -UUCGCGCGCGuuuauCACGCCCUgcu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 153381 | 0.7 | 0.704255 |
Target: 5'- gAAGCGuUGCGCGAggggaaaccgcuaAUGGUGCaGGACGu -3' miRNA: 3'- -UUCGC-GCGCGUU-------------UAUCACGcCCUGCu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 94602 | 0.7 | 0.705269 |
Target: 5'- cGGCGCGgGCAuggcuuggcGGUGCGGcGugGAc -3' miRNA: 3'- uUCGCGCgCGUuua------UCACGCC-CugCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 29262 | 0.7 | 0.74522 |
Target: 5'- -uGCgGCGCGCAGAUuguuggacuGUGCGcGGGCGc -3' miRNA: 3'- uuCG-CGCGCGUUUAu--------CACGC-CCUGCu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 154928 | 0.7 | 0.74522 |
Target: 5'- -cGCGCGCGUugcuagccAGAgcGUGgGGGACGu -3' miRNA: 3'- uuCGCGCGCG--------UUUauCACgCCCUGCu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 155266 | 0.7 | 0.74522 |
Target: 5'- cAGCG-GCGCgGGGUAGgcgGCGgGGACGAu -3' miRNA: 3'- uUCGCgCGCG-UUUAUCa--CGC-CCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 95467 | 0.7 | 0.754977 |
Target: 5'- cGGCGgGCGCAGcgAGcGCGGG-CGc -3' miRNA: 3'- uUCGCgCGCGUUuaUCaCGCCCuGCu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 106719 | 0.69 | 0.799196 |
Target: 5'- --uCGCGCGCcuaguggucgacaaGGAUGGUGCGGGG-GAg -3' miRNA: 3'- uucGCGCGCG--------------UUUAUCACGCCCUgCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 23944 | 0.69 | 0.801913 |
Target: 5'- -cGCGC-CGCcGAUGGguaUGUGGGGCGGu -3' miRNA: 3'- uuCGCGcGCGuUUAUC---ACGCCCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 95339 | 0.69 | 0.801913 |
Target: 5'- cGGGCGC-CGCGAAacGgacucgGCGGGGCGGc -3' miRNA: 3'- -UUCGCGcGCGUUUauCa-----CGCCCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 136365 | 0.68 | 0.810864 |
Target: 5'- uGGGCGCugccgGCGCGAAUAGcgcUGUGGaGCGAu -3' miRNA: 3'- -UUCGCG-----CGCGUUUAUC---ACGCCcUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 77295 | 0.68 | 0.814398 |
Target: 5'- uGGGUGCGCgGCAGAUAGUGUcucguucaacgcucaGuGGAUGGa -3' miRNA: 3'- -UUCGCGCG-CGUUUAUCACG---------------C-CCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 25153 | 0.68 | 0.818778 |
Target: 5'- -cGCGCGCguuugcgGCAGggGGUgGCGGGGCa- -3' miRNA: 3'- uuCGCGCG-------CGUUuaUCA-CGCCCUGcu -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 2612 | 0.68 | 0.819648 |
Target: 5'- aAGGCGCGaGcCGAGcAG-GCGGGGCGGa -3' miRNA: 3'- -UUCGCGCgC-GUUUaUCaCGCCCUGCU- -5' |
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24374 | 5' | -55.4 | NC_005264.1 | + | 121639 | 0.68 | 0.819648 |
Target: 5'- aAGGCGCGaGcCGAGcAG-GCGGGGCGGa -3' miRNA: 3'- -UUCGCGCgC-GUUUaUCaCGCCCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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