miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24374 5' -55.4 NC_005264.1 + 2612 0.68 0.819648
Target:  5'- aAGGCGCGaGcCGAGcAG-GCGGGGCGGa -3'
miRNA:   3'- -UUCGCGCgC-GUUUaUCaCGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 2887 0.66 0.926697
Target:  5'- gGGGCGCgGCGCGGcgGGgaggGCGacGGCGAg -3'
miRNA:   3'- -UUCGCG-CGCGUUuaUCa---CGCc-CUGCU- -5'
24374 5' -55.4 NC_005264.1 + 3666 0.66 0.915419
Target:  5'- uGGGgGCGacugGCAu-UGGUGCGGGGCc- -3'
miRNA:   3'- -UUCgCGCg---CGUuuAUCACGCCCUGcu -5'
24374 5' -55.4 NC_005264.1 + 15761 0.66 0.926697
Target:  5'- -uGUGCGCGCGAgcGUGGcucCGGG-CGAg -3'
miRNA:   3'- uuCGCGCGCGUU--UAUCac-GCCCuGCU- -5'
24374 5' -55.4 NC_005264.1 + 22719 0.67 0.882299
Target:  5'- -uGCgGCGCGCAAgcGUgugucugcugcccGGUGCuGGGCGAa -3'
miRNA:   3'- uuCG-CGCGCGUU--UA-------------UCACGcCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 23944 0.69 0.801913
Target:  5'- -cGCGC-CGCcGAUGGguaUGUGGGGCGGu -3'
miRNA:   3'- uuCGCGcGCGuUUAUC---ACGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 25153 0.68 0.818778
Target:  5'- -cGCGCGCguuugcgGCAGggGGUgGCGGGGCa- -3'
miRNA:   3'- uuCGCGCG-------CGUUuaUCA-CGCCCUGcu -5'
24374 5' -55.4 NC_005264.1 + 29262 0.7 0.74522
Target:  5'- -uGCgGCGCGCAGAUuguuggacuGUGCGcGGGCGc -3'
miRNA:   3'- uuCG-CGCGCGUUUAu--------CACGC-CCUGCu -5'
24374 5' -55.4 NC_005264.1 + 43882 0.66 0.896683
Target:  5'- cGAGCGCG-GCAAAgggGGcGCcGGaGACGAu -3'
miRNA:   3'- -UUCGCGCgCGUUUa--UCaCG-CC-CUGCU- -5'
24374 5' -55.4 NC_005264.1 + 46588 0.75 0.42252
Target:  5'- -cGCGCGUGCGGAggcucugucccUGCGGGGCGAg -3'
miRNA:   3'- uuCGCGCGCGUUUauc--------ACGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 50563 0.71 0.653973
Target:  5'- uAGGCGCGCGC-----GUGCGGGAa-- -3'
miRNA:   3'- -UUCGCGCGCGuuuauCACGCCCUgcu -5'
24374 5' -55.4 NC_005264.1 + 50818 0.66 0.926697
Target:  5'- -cGCGCGCGCAGGUu-UGCGuguaGACGu -3'
miRNA:   3'- uuCGCGCGCGUUUAucACGCc---CUGCu -5'
24374 5' -55.4 NC_005264.1 + 54249 0.72 0.612557
Target:  5'- -cGCGCGCcaacguguCGAGUGGgaGCGGGGCGAg -3'
miRNA:   3'- uuCGCGCGc-------GUUUAUCa-CGCCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 60032 0.68 0.844924
Target:  5'- gAGGCGC-CGCA--UGGUGgGGGAaaaGAa -3'
miRNA:   3'- -UUCGCGcGCGUuuAUCACgCCCUg--CU- -5'
24374 5' -55.4 NC_005264.1 + 67264 0.68 0.831652
Target:  5'- aAAGCGCGCugugguauagacgacGCGAAUGG-GCGGGuaucaGAa -3'
miRNA:   3'- -UUCGCGCG---------------CGUUUAUCaCGCCCug---CU- -5'
24374 5' -55.4 NC_005264.1 + 70590 0.66 0.915419
Target:  5'- aGAGCGCGCuugGCGAGgcgGGccuucagagcaUGCuGGACGAg -3'
miRNA:   3'- -UUCGCGCG---CGUUUa--UC-----------ACGcCCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 77295 0.68 0.814398
Target:  5'- uGGGUGCGCgGCAGAUAGUGUcucguucaacgcucaGuGGAUGGa -3'
miRNA:   3'- -UUCGCGCG-CGUUUAUCACG---------------C-CCUGCU- -5'
24374 5' -55.4 NC_005264.1 + 79805 0.66 0.909415
Target:  5'- ---aGUGCGCAAcgAGgccccUGCGGcGACGAa -3'
miRNA:   3'- uucgCGCGCGUUuaUC-----ACGCC-CUGCU- -5'
24374 5' -55.4 NC_005264.1 + 84927 0.66 0.896683
Target:  5'- uGGCuGCGCGCucuguuGUAGUGUGGcGcCGGg -3'
miRNA:   3'- uUCG-CGCGCGuu----UAUCACGCC-CuGCU- -5'
24374 5' -55.4 NC_005264.1 + 87528 0.67 0.875825
Target:  5'- uGGCGCGCgGCAGAUGcugcaGCGuGGGCGu -3'
miRNA:   3'- uUCGCGCG-CGUUUAUca---CGC-CCUGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.