Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24375 | 3' | -55.6 | NC_005264.1 | + | 75037 | 0.69 | 0.835531 |
Target: 5'- gGCUAUCGaUUGuCGCGAAGCccGGGUCg -3' miRNA: 3'- gCGGUAGC-AGCcGCGCUUUG--UCCAGa -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 96351 | 0.69 | 0.835531 |
Target: 5'- gCGCCAUCGcCGGCaCGGGACucaaaAGGaUCa -3' miRNA: 3'- -GCGGUAGCaGCCGcGCUUUG-----UCC-AGa -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 3105 | 0.69 | 0.835531 |
Target: 5'- uGCCAUCG-C-GCGC--AGCAGGUCUc -3' miRNA: 3'- gCGGUAGCaGcCGCGcuUUGUCCAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 45565 | 0.69 | 0.827247 |
Target: 5'- uCGCCcgUGUCGGCGCGc-ACGaGUCc -3' miRNA: 3'- -GCGGuaGCAGCCGCGCuuUGUcCAGa -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 130542 | 0.69 | 0.818788 |
Target: 5'- gCGCgaagCGUCG-CGGCGCGugugcuacgcGCAGGUCUc -3' miRNA: 3'- -GCG----GUAGCaGCCGCGCuu--------UGUCCAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 159670 | 0.69 | 0.818788 |
Target: 5'- gCGCCGUCG-C-GCGCGGA--GGGUCg -3' miRNA: 3'- -GCGGUAGCaGcCGCGCUUugUCCAGa -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 127183 | 0.69 | 0.818788 |
Target: 5'- aCGaCCAUCGU--GCGCGAAgcGCAGGUa- -3' miRNA: 3'- -GC-GGUAGCAgcCGCGCUU--UGUCCAga -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 40643 | 0.69 | 0.810162 |
Target: 5'- gCGCCGUCG-CGaCGCGGA--GGGUCg -3' miRNA: 3'- -GCGGUAGCaGCcGCGCUUugUCCAGa -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 36079 | 0.69 | 0.801377 |
Target: 5'- uGCCGUCGcugucccucucuUCGGCGCGGcuggcaGAUGGGUa- -3' miRNA: 3'- gCGGUAGC------------AGCCGCGCU------UUGUCCAga -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 75809 | 0.69 | 0.801377 |
Target: 5'- uCGCCGUcCGUaGGCGCGc-GguGGUCUa -3' miRNA: 3'- -GCGGUA-GCAgCCGCGCuuUguCCAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 23235 | 0.7 | 0.783364 |
Target: 5'- gGCCA-CGUUGGagccguagaCGaCGGAGCAGGUCa -3' miRNA: 3'- gCGGUaGCAGCC---------GC-GCUUUGUCCAGa -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 8138 | 0.7 | 0.755363 |
Target: 5'- aCGCCGagGUCGGgucugagaaCGCGAA-UAGGUCUu -3' miRNA: 3'- -GCGGUagCAGCC---------GCGCUUuGUCCAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 127165 | 0.7 | 0.755363 |
Target: 5'- aCGCCGagGUCGGgucugagaaCGCGAA-UAGGUCUu -3' miRNA: 3'- -GCGGUagCAGCC---------GCGCUUuGUCCAGA- -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 38611 | 0.7 | 0.745803 |
Target: 5'- uCGCC-UCGccgCGGCGCGAgacacGACAGGa-- -3' miRNA: 3'- -GCGGuAGCa--GCCGCGCU-----UUGUCCaga -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 157638 | 0.7 | 0.745803 |
Target: 5'- uCGCC-UCGccgCGGCGCGAgacacGACAGGa-- -3' miRNA: 3'- -GCGGuAGCa--GCCGCGCU-----UUGUCCaga -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 54552 | 0.71 | 0.73323 |
Target: 5'- cCGCCGacUCgGUCaGCGCGAuucucguggggcgcGACGGGUCg -3' miRNA: 3'- -GCGGU--AG-CAGcCGCGCU--------------UUGUCCAGa -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 3679 | 0.71 | 0.726399 |
Target: 5'- gGCCGUC-UCGGCgGCGAGACgAGGa-- -3' miRNA: 3'- gCGGUAGcAGCCG-CGCUUUG-UCCaga -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 22397 | 0.71 | 0.726399 |
Target: 5'- aCGCUAUCGcaggagauuuccUCGuGCGCGu-ACGGGUCg -3' miRNA: 3'- -GCGGUAGC------------AGC-CGCGCuuUGUCCAGa -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 122706 | 0.71 | 0.726399 |
Target: 5'- gGCCGUC-UCGGCgGCGAGACgAGGa-- -3' miRNA: 3'- gCGGUAGcAGCCG-CGCUUUG-UCCaga -5' |
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24375 | 3' | -55.6 | NC_005264.1 | + | 81855 | 0.71 | 0.725419 |
Target: 5'- gGCCA-CGUCGGCGUcgaggaaGAAAUuGGUCg -3' miRNA: 3'- gCGGUaGCAGCCGCG-------CUUUGuCCAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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