miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 3' -55.6 NC_005264.1 + 39084 0.66 0.929808
Target:  5'- aCGCCGgc-UCGGCGgGcAGCGGcGUCUg -3'
miRNA:   3'- -GCGGUagcAGCCGCgCuUUGUC-CAGA- -5'
24375 3' -55.6 NC_005264.1 + 40643 0.69 0.810162
Target:  5'- gCGCCGUCG-CGaCGCGGA--GGGUCg -3'
miRNA:   3'- -GCGGUAGCaGCcGCGCUUugUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 42140 0.78 0.341612
Target:  5'- cCGCCGgcuUUGUCGGCGCGAGGCcuuguuuGGUCc -3'
miRNA:   3'- -GCGGU---AGCAGCCGCGCUUUGu------CCAGa -5'
24375 3' -55.6 NC_005264.1 + 45565 0.69 0.827247
Target:  5'- uCGCCcgUGUCGGCGCGc-ACGaGUCc -3'
miRNA:   3'- -GCGGuaGCAGCCGCGCuuUGUcCAGa -5'
24375 3' -55.6 NC_005264.1 + 54552 0.71 0.73323
Target:  5'- cCGCCGacUCgGUCaGCGCGAuucucguggggcgcGACGGGUCg -3'
miRNA:   3'- -GCGGU--AG-CAGcCGCGCU--------------UUGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 54602 0.67 0.888058
Target:  5'- aCGCCggCcUCGGCGCGu-GCGGGa-- -3'
miRNA:   3'- -GCGGuaGcAGCCGCGCuuUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 57364 0.67 0.907341
Target:  5'- uCGCCGUCGUCGcuggaGgGGAgucuuaccugacGCGGGUCg -3'
miRNA:   3'- -GCGGUAGCAGCcg---CgCUU------------UGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 58027 0.68 0.858501
Target:  5'- gGCCGUCGUgCGGCgcccgcucgucucGCGAAAgAGGa-- -3'
miRNA:   3'- gCGGUAGCA-GCCG-------------CGCUUUgUCCaga -5'
24375 3' -55.6 NC_005264.1 + 60847 0.66 0.924544
Target:  5'- gCGUCggCGUCGGCGCGugcGCGGcaaaguuuucuaGUCUc -3'
miRNA:   3'- -GCGGuaGCAGCCGCGCuu-UGUC------------CAGA- -5'
24375 3' -55.6 NC_005264.1 + 61905 0.66 0.936784
Target:  5'- uGCCGUCuaucaCGGCGCGcgcuaacuuaauCAGGUCg -3'
miRNA:   3'- gCGGUAGca---GCCGCGCuuu---------GUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 66624 0.66 0.929808
Target:  5'- gCGCCGUCG-CGGCcCGAGGCAaG-CUg -3'
miRNA:   3'- -GCGGUAGCaGCCGcGCUUUGUcCaGA- -5'
24375 3' -55.6 NC_005264.1 + 66847 0.67 0.888058
Target:  5'- aCGCCGUCGccCGaCGCGAAAUAGaUCg -3'
miRNA:   3'- -GCGGUAGCa-GCcGCGCUUUGUCcAGa -5'
24375 3' -55.6 NC_005264.1 + 69072 0.67 0.881182
Target:  5'- gGUCAUCGUCGuCGCGcaccGCAaGGUCa -3'
miRNA:   3'- gCGGUAGCAGCcGCGCuu--UGU-CCAGa -5'
24375 3' -55.6 NC_005264.1 + 70259 0.75 0.468654
Target:  5'- uGCCcgCGUCGGCGUaAAACcuGGUCUg -3'
miRNA:   3'- gCGGuaGCAGCCGCGcUUUGu-CCAGA- -5'
24375 3' -55.6 NC_005264.1 + 74636 0.68 0.874087
Target:  5'- gCGCUAcCGUCaGCGCGAAcccaggguGCAGGcCg -3'
miRNA:   3'- -GCGGUaGCAGcCGCGCUU--------UGUCCaGa -5'
24375 3' -55.6 NC_005264.1 + 74911 0.68 0.84998
Target:  5'- aGCCAUgGUCGGCGCGuacucgugcaagauACgauaaaucucuaccGGGUCg -3'
miRNA:   3'- gCGGUAgCAGCCGCGCuu------------UG--------------UCCAGa -5'
24375 3' -55.6 NC_005264.1 + 75037 0.69 0.835531
Target:  5'- gGCUAUCGaUUGuCGCGAAGCccGGGUCg -3'
miRNA:   3'- gCGGUAGC-AGCcGCGCUUUG--UCCAGa -5'
24375 3' -55.6 NC_005264.1 + 75263 0.71 0.696714
Target:  5'- gCGCCGuguucguccUCGUCGGCGCuuuGCuGGUCc -3'
miRNA:   3'- -GCGGU---------AGCAGCCGCGcuuUGuCCAGa -5'
24375 3' -55.6 NC_005264.1 + 75399 0.67 0.901141
Target:  5'- gCGCCAcCGUCuGCGCGGccGCGGG-Ca -3'
miRNA:   3'- -GCGGUaGCAGcCGCGCUu-UGUCCaGa -5'
24375 3' -55.6 NC_005264.1 + 75696 0.73 0.605697
Target:  5'- gCGCCGUCuuUCGGCGCGaAGACuGGUg- -3'
miRNA:   3'- -GCGGUAGc-AGCCGCGC-UUUGuCCAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.