miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 3' -55.6 NC_005264.1 + 3105 0.69 0.835531
Target:  5'- uGCCAUCG-C-GCGC--AGCAGGUCUc -3'
miRNA:   3'- gCGGUAGCaGcCGCGcuUUGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 3489 0.68 0.843634
Target:  5'- cCGCCGcaCG-CGGCGgGggGCAGGg-- -3'
miRNA:   3'- -GCGGUa-GCaGCCGCgCuuUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 3679 0.71 0.726399
Target:  5'- gGCCGUC-UCGGCgGCGAGACgAGGa-- -3'
miRNA:   3'- gCGGUAGcAGCCG-CGCUUUG-UCCaga -5'
24375 3' -55.6 NC_005264.1 + 5530 0.74 0.545517
Target:  5'- aGCCGcggCGUCucGCGCGGAGCGGGUUUc -3'
miRNA:   3'- gCGGUa--GCAGc-CGCGCUUUGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 6494 0.68 0.866779
Target:  5'- gGCCAUCGagGGC-CGGuAGCcGGUCUu -3'
miRNA:   3'- gCGGUAGCagCCGcGCU-UUGuCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 7077 0.66 0.934838
Target:  5'- gCGCCGUCGcgCuGCGgGGAACugAGGUUUc -3'
miRNA:   3'- -GCGGUAGCa-GcCGCgCUUUG--UCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 8138 0.7 0.755363
Target:  5'- aCGCCGagGUCGGgucugagaaCGCGAA-UAGGUCUu -3'
miRNA:   3'- -GCGGUagCAGCC---------GCGCUUuGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 13214 0.68 0.859264
Target:  5'- cCGCCGUCGcCGG-GCugcuucucccgaGAAGCAGGUg- -3'
miRNA:   3'- -GCGGUAGCaGCCgCG------------CUUUGUCCAga -5'
24375 3' -55.6 NC_005264.1 + 18161 0.67 0.901141
Target:  5'- uGUCGUCGUCGGCGCcacugucGugGGGg-- -3'
miRNA:   3'- gCGGUAGCAGCCGCGcu-----UugUCCaga -5'
24375 3' -55.6 NC_005264.1 + 18302 0.67 0.901141
Target:  5'- -uCCGUCGUCGuuGCGCGAGGCcguccGUCUa -3'
miRNA:   3'- gcGGUAGCAGC--CGCGCUUUGuc---CAGA- -5'
24375 3' -55.6 NC_005264.1 + 18428 0.67 0.901141
Target:  5'- gCGCCcucUCGcUCGGCGCG----GGGUCg -3'
miRNA:   3'- -GCGGu--AGC-AGCCGCGCuuugUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 22230 0.66 0.929808
Target:  5'- uCGCC-UCGUCGGCGgucuGGGC-GGUCg -3'
miRNA:   3'- -GCGGuAGCAGCCGCgc--UUUGuCCAGa -5'
24375 3' -55.6 NC_005264.1 + 22397 0.71 0.726399
Target:  5'- aCGCUAUCGcaggagauuuccUCGuGCGCGu-ACGGGUCg -3'
miRNA:   3'- -GCGGUAGC------------AGC-CGCGCuuUGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 23235 0.7 0.783364
Target:  5'- gGCCA-CGUUGGagccguagaCGaCGGAGCAGGUCa -3'
miRNA:   3'- gCGGUaGCAGCC---------GC-GCUUUGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 29911 0.66 0.924544
Target:  5'- gCGCUAcccCGUCGGCGCuAGGgAGGUa- -3'
miRNA:   3'- -GCGGUa--GCAGCCGCGcUUUgUCCAga -5'
24375 3' -55.6 NC_005264.1 + 30845 0.68 0.843634
Target:  5'- gCGUCGUCGUCGGCgGCGgcGCGccgcccGGUa- -3'
miRNA:   3'- -GCGGUAGCAGCCG-CGCuuUGU------CCAga -5'
24375 3' -55.6 NC_005264.1 + 32864 0.66 0.919044
Target:  5'- uCGUCAUCGUCGGUcccGCGGu---GGUUg -3'
miRNA:   3'- -GCGGUAGCAGCCG---CGCUuuguCCAGa -5'
24375 3' -55.6 NC_005264.1 + 34092 0.72 0.647304
Target:  5'- uGCCGcggCGggcacaauggcucagCGGCGCGAAACAGcGUCg -3'
miRNA:   3'- gCGGUa--GCa--------------GCCGCGCUUUGUC-CAGa -5'
24375 3' -55.6 NC_005264.1 + 36079 0.69 0.801377
Target:  5'- uGCCGUCGcugucccucucuUCGGCGCGGcuggcaGAUGGGUa- -3'
miRNA:   3'- gCGGUAGC------------AGCCGCGCU------UUGUCCAga -5'
24375 3' -55.6 NC_005264.1 + 38611 0.7 0.745803
Target:  5'- uCGCC-UCGccgCGGCGCGAgacacGACAGGa-- -3'
miRNA:   3'- -GCGGuAGCa--GCCGCGCU-----UUGUCCaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.