miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 3' -55.6 NC_005264.1 + 54602 0.67 0.888058
Target:  5'- aCGCCggCcUCGGCGCGu-GCGGGa-- -3'
miRNA:   3'- -GCGGuaGcAGCCGCGCuuUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 3105 0.69 0.835531
Target:  5'- uGCCAUCG-C-GCGC--AGCAGGUCUc -3'
miRNA:   3'- gCGGUAGCaGcCGCGcuUUGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 149871 0.68 0.843634
Target:  5'- gCGUCGUCGUCGGCgGCGgcGCGccgcccGGUa- -3'
miRNA:   3'- -GCGGUAGCAGCCG-CGCuuUGU------CCAga -5'
24375 3' -55.6 NC_005264.1 + 122516 0.68 0.843634
Target:  5'- cCGCCGcaCG-CGGCGgGggGCAGGg-- -3'
miRNA:   3'- -GCGGUa-GCaGCCGCgCuuUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 74911 0.68 0.84998
Target:  5'- aGCCAUgGUCGGCGCGuacucgugcaagauACgauaaaucucuaccGGGUCg -3'
miRNA:   3'- gCGGUAgCAGCCGCGCuu------------UG--------------UCCAGa -5'
24375 3' -55.6 NC_005264.1 + 117500 0.68 0.851547
Target:  5'- uCGCC-UCGUCucgGGCGCGgcGCGucugcGGUCg -3'
miRNA:   3'- -GCGGuAGCAG---CCGCGCuuUGU-----CCAGa -5'
24375 3' -55.6 NC_005264.1 + 58027 0.68 0.858501
Target:  5'- gGCCGUCGUgCGGCgcccgcucgucucGCGAAAgAGGa-- -3'
miRNA:   3'- gCGGUAGCA-GCCG-------------CGCUUUgUCCaga -5'
24375 3' -55.6 NC_005264.1 + 132241 0.68 0.859264
Target:  5'- cCGCCGUCGcCGG-GCugcuucucccgaGAAGCAGGUg- -3'
miRNA:   3'- -GCGGUAGCaGCCgCG------------CUUUGUCCAga -5'
24375 3' -55.6 NC_005264.1 + 125521 0.68 0.866779
Target:  5'- gGCCAUCGagGGC-CGGuAGCcGGUCUu -3'
miRNA:   3'- gCGGUAGCagCCGcGCU-UUGuCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 45565 0.69 0.827247
Target:  5'- uCGCCcgUGUCGGCGCGc-ACGaGUCc -3'
miRNA:   3'- -GCGGuaGCAGCCGCGCuuUGUcCAGa -5'
24375 3' -55.6 NC_005264.1 + 159670 0.69 0.818788
Target:  5'- gCGCCGUCG-C-GCGCGGA--GGGUCg -3'
miRNA:   3'- -GCGGUAGCaGcCGCGCUUugUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 75809 0.69 0.801377
Target:  5'- uCGCCGUcCGUaGGCGCGc-GguGGUCUa -3'
miRNA:   3'- -GCGGUA-GCAgCCGCGCuuUguCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 5530 0.74 0.545517
Target:  5'- aGCCGcggCGUCucGCGCGGAGCGGGUUUc -3'
miRNA:   3'- gCGGUa--GCAGc-CGCGCUUUGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 75696 0.73 0.605697
Target:  5'- gCGCCGUCuuUCGGCGCGaAGACuGGUg- -3'
miRNA:   3'- -GCGGUAGc-AGCCGCGC-UUUGuCCAga -5'
24375 3' -55.6 NC_005264.1 + 153119 0.72 0.647304
Target:  5'- uGCCGcggCGggcacaauggcucagCGGCGCGAAACAGcGUCg -3'
miRNA:   3'- gCGGUa--GCa--------------GCCGCGCUUUGUC-CAGa -5'
24375 3' -55.6 NC_005264.1 + 75263 0.71 0.696714
Target:  5'- gCGCCGuguucguccUCGUCGGCGCuuuGCuGGUCc -3'
miRNA:   3'- -GCGGU---------AGCAGCCGCGcuuUGuCCAGa -5'
24375 3' -55.6 NC_005264.1 + 122706 0.71 0.726399
Target:  5'- gGCCGUC-UCGGCgGCGAGACgAGGa-- -3'
miRNA:   3'- gCGGUAGcAGCCG-CGCUUUG-UCCaga -5'
24375 3' -55.6 NC_005264.1 + 157638 0.7 0.745803
Target:  5'- uCGCC-UCGccgCGGCGCGAgacacGACAGGa-- -3'
miRNA:   3'- -GCGGuAGCa--GCCGCGCU-----UUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 127165 0.7 0.755363
Target:  5'- aCGCCGagGUCGGgucugagaaCGCGAA-UAGGUCUu -3'
miRNA:   3'- -GCGGUagCAGCC---------GCGCUUuGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 36079 0.69 0.801377
Target:  5'- uGCCGUCGcugucccucucuUCGGCGCGGcuggcaGAUGGGUa- -3'
miRNA:   3'- gCGGUAGC------------AGCCGCGCU------UUGUCCAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.