miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 3' -55.6 NC_005264.1 + 126889 1.07 0.004898
Target:  5'- uCGCCAUCGUCGGCGCGAAACAGGUCUc -3'
miRNA:   3'- -GCGGUAGCAGCCGCGCUUUGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 93251 0.83 0.18447
Target:  5'- gCGCCcUCGUCGGCGCGuucgcgcaaccuGAAUAGGUCg -3'
miRNA:   3'- -GCGGuAGCAGCCGCGC------------UUUGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 42140 0.78 0.341612
Target:  5'- cCGCCGgcuUUGUCGGCGCGAGGCcuuguuuGGUCc -3'
miRNA:   3'- -GCGGU---AGCAGCCGCGCUUUGu------CCAGa -5'
24375 3' -55.6 NC_005264.1 + 83395 0.78 0.349269
Target:  5'- cCGCuCGUCGUCuGCGCGccGCGGGUCg -3'
miRNA:   3'- -GCG-GUAGCAGcCGCGCuuUGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 70259 0.75 0.468654
Target:  5'- uGCCcgCGUCGGCGUaAAACcuGGUCUg -3'
miRNA:   3'- gCGGuaGCAGCCGCGcUUUGu-CCAGA- -5'
24375 3' -55.6 NC_005264.1 + 5530 0.74 0.545517
Target:  5'- aGCCGcggCGUCucGCGCGGAGCGGGUUUc -3'
miRNA:   3'- gCGGUa--GCAGc-CGCGCUUUGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 75696 0.73 0.605697
Target:  5'- gCGCCGUCuuUCGGCGCGaAGACuGGUg- -3'
miRNA:   3'- -GCGGUAGc-AGCCGCGC-UUUGuCCAga -5'
24375 3' -55.6 NC_005264.1 + 34092 0.72 0.647304
Target:  5'- uGCCGcggCGggcacaauggcucagCGGCGCGAAACAGcGUCg -3'
miRNA:   3'- gCGGUa--GCa--------------GCCGCGCUUUGUC-CAGa -5'
24375 3' -55.6 NC_005264.1 + 153119 0.72 0.647304
Target:  5'- uGCCGcggCGggcacaauggcucagCGGCGCGAAACAGcGUCg -3'
miRNA:   3'- gCGGUa--GCa--------------GCCGCGCUUUGUC-CAGa -5'
24375 3' -55.6 NC_005264.1 + 75263 0.71 0.696714
Target:  5'- gCGCCGuguucguccUCGUCGGCGCuuuGCuGGUCc -3'
miRNA:   3'- -GCGGU---------AGCAGCCGCGcuuUGuCCAGa -5'
24375 3' -55.6 NC_005264.1 + 81855 0.71 0.725419
Target:  5'- gGCCA-CGUCGGCGUcgaggaaGAAAUuGGUCg -3'
miRNA:   3'- gCGGUaGCAGCCGCG-------CUUUGuCCAGa -5'
24375 3' -55.6 NC_005264.1 + 22397 0.71 0.726399
Target:  5'- aCGCUAUCGcaggagauuuccUCGuGCGCGu-ACGGGUCg -3'
miRNA:   3'- -GCGGUAGC------------AGC-CGCGCuuUGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 3679 0.71 0.726399
Target:  5'- gGCCGUC-UCGGCgGCGAGACgAGGa-- -3'
miRNA:   3'- gCGGUAGcAGCCG-CGCUUUG-UCCaga -5'
24375 3' -55.6 NC_005264.1 + 122706 0.71 0.726399
Target:  5'- gGCCGUC-UCGGCgGCGAGACgAGGa-- -3'
miRNA:   3'- gCGGUAGcAGCCG-CGCUUUG-UCCaga -5'
24375 3' -55.6 NC_005264.1 + 54552 0.71 0.73323
Target:  5'- cCGCCGacUCgGUCaGCGCGAuucucguggggcgcGACGGGUCg -3'
miRNA:   3'- -GCGGU--AG-CAGcCGCGCU--------------UUGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 38611 0.7 0.745803
Target:  5'- uCGCC-UCGccgCGGCGCGAgacacGACAGGa-- -3'
miRNA:   3'- -GCGGuAGCa--GCCGCGCU-----UUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 157638 0.7 0.745803
Target:  5'- uCGCC-UCGccgCGGCGCGAgacacGACAGGa-- -3'
miRNA:   3'- -GCGGuAGCa--GCCGCGCU-----UUGUCCaga -5'
24375 3' -55.6 NC_005264.1 + 127165 0.7 0.755363
Target:  5'- aCGCCGagGUCGGgucugagaaCGCGAA-UAGGUCUu -3'
miRNA:   3'- -GCGGUagCAGCC---------GCGCUUuGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 8138 0.7 0.755363
Target:  5'- aCGCCGagGUCGGgucugagaaCGCGAA-UAGGUCUu -3'
miRNA:   3'- -GCGGUagCAGCC---------GCGCUUuGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 23235 0.7 0.783364
Target:  5'- gGCCA-CGUUGGagccguagaCGaCGGAGCAGGUCa -3'
miRNA:   3'- gCGGUaGCAGCC---------GC-GCUUUGUCCAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.