miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 30414 0.66 0.984119
Target:  5'- -cGAGCGUAGCGuuguacAGCC-GCGGCUUg -3'
miRNA:   3'- aaUUUGUAUCGCuc----UCGGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 30501 0.66 0.985937
Target:  5'- -----gGUAGCGAG-GCCauugcgggaAGCGGCUCu -3'
miRNA:   3'- aauuugUAUCGCUCuCGG---------UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 30912 0.68 0.955036
Target:  5'- -aGGACu--GCGAG-GCCGgGCGGCUCg -3'
miRNA:   3'- aaUUUGuauCGCUCuCGGU-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 31189 0.67 0.97759
Target:  5'- -cGAGCGagugGGaCGGGGGgCuGCGGCCCu -3'
miRNA:   3'- aaUUUGUa---UC-GCUCUCgGuCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 32366 0.74 0.71778
Target:  5'- -gGGGCuguucUGGCGAGGauGCCGGCGGCCg -3'
miRNA:   3'- aaUUUGu----AUCGCUCU--CGGUCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 33911 0.68 0.960447
Target:  5'- -aAGACAUGGCG-GAGCgAGCccacacgaacaugaGCCCg -3'
miRNA:   3'- aaUUUGUAUCGCuCUCGgUCGc-------------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 34243 0.7 0.91404
Target:  5'- aUAGACgaacccggcuucuGUAGCGAGGcGCgGGCGACgCg -3'
miRNA:   3'- aAUUUG-------------UAUCGCUCU-CGgUCGCUGgG- -5'
24375 5' -51.5 NC_005264.1 + 35804 0.68 0.950448
Target:  5'- ----uCGUGGCGGGcgccucugccGGCCccgcaauGGCGGCCCg -3'
miRNA:   3'- aauuuGUAUCGCUC----------UCGG-------UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 37111 0.68 0.958949
Target:  5'- gUGGGCA-GGaCGAGGGCgaGGCGGCCg -3'
miRNA:   3'- aAUUUGUaUC-GCUCUCGg-UCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 38383 0.69 0.931719
Target:  5'- -------cGGCGAGAG-CGGCGACgCCg -3'
miRNA:   3'- aauuuguaUCGCUCUCgGUCGCUG-GG- -5'
24375 5' -51.5 NC_005264.1 + 39018 0.66 0.990447
Target:  5'- aUGGACcagGGCGuucGCCAaCGACCCa -3'
miRNA:   3'- aAUUUGua-UCGCucuCGGUcGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 40904 0.67 0.979726
Target:  5'- -cGAGCAUaguuaccuucggcGGCGcGGGCUAGCuucugaacaGACCCg -3'
miRNA:   3'- aaUUUGUA-------------UCGCuCUCGGUCG---------CUGGG- -5'
24375 5' -51.5 NC_005264.1 + 46443 0.67 0.975026
Target:  5'- -cGGGCucAGCGAGAGCCGaCGAagaggucuCCCg -3'
miRNA:   3'- aaUUUGuaUCGCUCUCGGUcGCU--------GGG- -5'
24375 5' -51.5 NC_005264.1 + 47010 0.67 0.979954
Target:  5'- ---cGCAUAGCGcggucaguccuGGGGCgAGCGACg- -3'
miRNA:   3'- aauuUGUAUCGC-----------UCUCGgUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 47854 0.68 0.955036
Target:  5'- ----cCGUGGCGGGGGC-AG-GGCCCa -3'
miRNA:   3'- aauuuGUAUCGCUCUCGgUCgCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 47942 0.67 0.975026
Target:  5'- -aGGAC--GGCGAGAcccgGuCCAGCGugCCc -3'
miRNA:   3'- aaUUUGuaUCGCUCU----C-GGUCGCugGG- -5'
24375 5' -51.5 NC_005264.1 + 48387 0.67 0.975026
Target:  5'- gUAGACuggGGCGucGGgCGGCGGCCa -3'
miRNA:   3'- aAUUUGua-UCGCucUCgGUCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 51411 0.66 0.990447
Target:  5'- ---uACAUGGCGuacGCCGGgGAgCCg -3'
miRNA:   3'- aauuUGUAUCGCucuCGGUCgCUgGG- -5'
24375 5' -51.5 NC_005264.1 + 54010 0.66 0.989092
Target:  5'- gUAAuccCAgAGCaAGAGCUcgcugAGCGACCCu -3'
miRNA:   3'- aAUUu--GUaUCGcUCUCGG-----UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 56594 0.66 0.984119
Target:  5'- --cAGCAggcGCGAGcGCCucGCGACCg -3'
miRNA:   3'- aauUUGUau-CGCUCuCGGu-CGCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.