miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 1439 0.69 0.926287
Target:  5'- -aGGGCcuccGCGGGAGCCAGCaccGGCCa -3'
miRNA:   3'- aaUUUGuau-CGCUCUCGGUCG---CUGGg -5'
24375 5' -51.5 NC_005264.1 + 2824 0.68 0.954631
Target:  5'- cUAAACGgguUGGCgGAGGGCCGGuCGcgcucgcgccgucGCCCg -3'
miRNA:   3'- aAUUUGU---AUCG-CUCUCGGUC-GC-------------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 2992 0.69 0.941809
Target:  5'- ---cAUcgAGCGccgacuGGGCCGGCGGCUCg -3'
miRNA:   3'- aauuUGuaUCGCu-----CUCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 5082 0.69 0.931719
Target:  5'- -gGAACGUggguuGGCGAggaGAGCCAgucuGCGGCCg -3'
miRNA:   3'- aaUUUGUA-----UCGCU---CUCGGU----CGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 6132 0.74 0.728068
Target:  5'- ---uGCGggagGGCGAGGGCCGcGCG-CCCg -3'
miRNA:   3'- aauuUGUa---UCGCUCUCGGU-CGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 8532 0.69 0.936892
Target:  5'- -gAAACAUcGUaaGAGGGCCAGCaaaaGCCCc -3'
miRNA:   3'- aaUUUGUAuCG--CUCUCGGUCGc---UGGG- -5'
24375 5' -51.5 NC_005264.1 + 8778 0.66 0.987592
Target:  5'- -cGAACGgcgGGCGucGGCCAGgaCGGCCa -3'
miRNA:   3'- aaUUUGUa--UCGCucUCGGUC--GCUGGg -5'
24375 5' -51.5 NC_005264.1 + 9489 0.71 0.865985
Target:  5'- ---cGCGUcAGCGAGucAGCCAGCGucaggcgcggcGCCCu -3'
miRNA:   3'- aauuUGUA-UCGCUC--UCGGUCGC-----------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 9839 0.67 0.975026
Target:  5'- ---cACGUucGCGAGAggGUCaAGCGGCCCc -3'
miRNA:   3'- aauuUGUAu-CGCUCU--CGG-UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 10451 0.66 0.984119
Target:  5'- ----uCGUAGaCGAGGGCagAGUGACCg -3'
miRNA:   3'- aauuuGUAUC-GCUCUCGg-UCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 10729 0.67 0.969269
Target:  5'- -cAAGCA-AGCGGggaaacGAG-CGGCGACCCu -3'
miRNA:   3'- aaUUUGUaUCGCU------CUCgGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 13354 0.69 0.931719
Target:  5'- aUGAACGUcggGGCc-GAGCCGG-GGCCCg -3'
miRNA:   3'- aAUUUGUA---UCGcuCUCGGUCgCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 14454 0.68 0.96606
Target:  5'- aUAGGCAUGGCGGcaAGCCucucGCGugCUu -3'
miRNA:   3'- aAUUUGUAUCGCUc-UCGGu---CGCugGG- -5'
24375 5' -51.5 NC_005264.1 + 16330 0.66 0.990447
Target:  5'- ---cGCGUAGCucuGGAaCCGcGCGGCCCa -3'
miRNA:   3'- aauuUGUAUCGc--UCUcGGU-CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 18517 0.68 0.96606
Target:  5'- -cGAGCAUGGUGGGGGUccuCAGUGAUa- -3'
miRNA:   3'- aaUUUGUAUCGCUCUCG---GUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 20143 0.66 0.985937
Target:  5'- -cAGGCgAUGGCGcgccGCCGGCG-CCCa -3'
miRNA:   3'- aaUUUG-UAUCGCucu-CGGUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 20892 0.66 0.982128
Target:  5'- gUUAAACAUgaGGCcu-GGCUcgGGCGGCCCa -3'
miRNA:   3'- -AAUUUGUA--UCGcucUCGG--UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 22850 0.66 0.989092
Target:  5'- -cGGACG-GGCGAG-GCCGcGCGaACCUa -3'
miRNA:   3'- aaUUUGUaUCGCUCuCGGU-CGC-UGGG- -5'
24375 5' -51.5 NC_005264.1 + 27900 0.7 0.914649
Target:  5'- --cAGCGUcucGGCGAGGGUgAGCGACg- -3'
miRNA:   3'- aauUUGUA---UCGCUCUCGgUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 28379 0.66 0.987592
Target:  5'- aUAAACGUAGCGgcguguauAGAuuCCAGCGGCa- -3'
miRNA:   3'- aAUUUGUAUCGC--------UCUc-GGUCGCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.