Results 1 - 20 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 113870 | 0.66 | 0.984119 |
Target: 5'- -gGAAgAguucuGCGccuacugcuuGGAGCgCAGCGGCCCg -3' miRNA: 3'- aaUUUgUau---CGC----------UCUCG-GUCGCUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 92929 | 0.66 | 0.982128 |
Target: 5'- gUGAGCA-AG-GAGuGUCGGCGGCUCu -3' miRNA: 3'- aAUUUGUaUCgCUCuCGGUCGCUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 93870 | 0.66 | 0.982128 |
Target: 5'- cUAAGC-UGGCGAGccAGgCGGCgGACCUu -3' miRNA: 3'- aAUUUGuAUCGCUC--UCgGUCG-CUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 10451 | 0.66 | 0.984119 |
Target: 5'- ----uCGUAGaCGAGGGCagAGUGACCg -3' miRNA: 3'- aauuuGUAUC-GCUCUCGg-UCGCUGGg -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 158045 | 0.66 | 0.990447 |
Target: 5'- aUGGACcagGGCGuucGCCAaCGACCCa -3' miRNA: 3'- aAUUUGua-UCGCucuCGGUcGCUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 16330 | 0.66 | 0.990447 |
Target: 5'- ---cGCGUAGCucuGGAaCCGcGCGGCCCa -3' miRNA: 3'- aauuUGUAUCGc--UCUcGGU-CGCUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 30414 | 0.66 | 0.984119 |
Target: 5'- -cGAGCGUAGCGuuguacAGCC-GCGGCUUg -3' miRNA: 3'- aaUUUGUAUCGCuc----UCGGuCGCUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 57991 | 0.66 | 0.985937 |
Target: 5'- ---cGCGcGGCGGccguGGCuCAGCGGCCCc -3' miRNA: 3'- aauuUGUaUCGCUc---UCG-GUCGCUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 145841 | 0.66 | 0.987434 |
Target: 5'- -aAGACA-GGCGAGcugcgcguuauugGGCCaauGGCGGCCUc -3' miRNA: 3'- aaUUUGUaUCGCUC-------------UCGG---UCGCUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 82955 | 0.66 | 0.990447 |
Target: 5'- -aAGACcaGGCcuGAGCCGGCGAugUCCg -3' miRNA: 3'- aaUUUGuaUCGcuCUCGGUCGCU--GGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 51411 | 0.66 | 0.990447 |
Target: 5'- ---uACAUGGCGuacGCCGGgGAgCCg -3' miRNA: 3'- aauuUGUAUCGCucuCGGUCgCUgGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 127804 | 0.66 | 0.987592 |
Target: 5'- -cGAACGgcgGGCGucGGCCAGgaCGGCCa -3' miRNA: 3'- aaUUUGUa--UCGCucUCGGUC--GCUGGg -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 115458 | 0.66 | 0.990318 |
Target: 5'- ---cACGUAGCuuuauugacaacuGGGGGCCAGa-GCCCu -3' miRNA: 3'- aauuUGUAUCG-------------CUCUCGGUCgcUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 30501 | 0.66 | 0.985937 |
Target: 5'- -----gGUAGCGAG-GCCauugcgggaAGCGGCUCu -3' miRNA: 3'- aauuugUAUCGCUCuCGG---------UCGCUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 54010 | 0.66 | 0.989092 |
Target: 5'- gUAAuccCAgAGCaAGAGCUcgcugAGCGACCCu -3' miRNA: 3'- aAUUu--GUaUCGcUCUCGG-----UCGCUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 135152 | 0.66 | 0.990447 |
Target: 5'- -cGAGCGUcGGCGAGgcagaGGCCAGCcgcguACCUc -3' miRNA: 3'- aaUUUGUA-UCGCUC-----UCGGUCGc----UGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 67939 | 0.66 | 0.990447 |
Target: 5'- -----uGUAGCGGGGuucccggcGCCuGCGGCUCg -3' miRNA: 3'- aauuugUAUCGCUCU--------CGGuCGCUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 39018 | 0.66 | 0.990447 |
Target: 5'- aUGGACcagGGCGuucGCCAaCGACCCa -3' miRNA: 3'- aAUUUGua-UCGCucuCGGUcGCUGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 133375 | 0.66 | 0.990447 |
Target: 5'- --cGACucGGCGAGAGUCAucGCGgcggcgcaGCCCg -3' miRNA: 3'- aauUUGuaUCGCUCUCGGU--CGC--------UGGG- -5' |
|||||||
24375 | 5' | -51.5 | NC_005264.1 | + | 22850 | 0.66 | 0.989092 |
Target: 5'- -cGGACG-GGCGAG-GCCGcGCGaACCUa -3' miRNA: 3'- aaUUUGUaUCGCUCuCGGU-CGC-UGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home