miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 126927 1.09 0.007103
Target:  5'- cUUAAACAUAGCGAGAGCCAGCGACCCc -3'
miRNA:   3'- -AAUUUGUAUCGCUCUCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 89881 0.77 0.580419
Target:  5'- -gAAACGUAGUuAGGGCCAGCGcCUCg -3'
miRNA:   3'- aaUUUGUAUCGcUCUCGGUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 79404 0.77 0.590981
Target:  5'- -cGGGCGUGGCGAG-GCCgcGGCGgaACCCa -3'
miRNA:   3'- aaUUUGUAUCGCUCuCGG--UCGC--UGGG- -5'
24375 5' -51.5 NC_005264.1 + 153079 0.76 0.633471
Target:  5'- -aGAGCGUAGgUGGGAGCaCGGCGGCUUg -3'
miRNA:   3'- aaUUUGUAUC-GCUCUCG-GUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 151393 0.74 0.71778
Target:  5'- -gGGGCuguucUGGCGAGGauGCCGGCGGCCg -3'
miRNA:   3'- aaUUUGu----AUCGCUCU--CGGUCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 32366 0.74 0.71778
Target:  5'- -gGGGCuguucUGGCGAGGauGCCGGCGGCCg -3'
miRNA:   3'- aaUUUGu----AUCGCUCU--CGGUCGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 6132 0.74 0.728068
Target:  5'- ---uGCGggagGGCGAGGGCCGcGCG-CCCg -3'
miRNA:   3'- aauuUGUa---UCGCUCUCGGU-CGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 125159 0.74 0.728068
Target:  5'- ---uGCGggagGGCGAGGGCCGcGCG-CCCg -3'
miRNA:   3'- aauuUGUa---UCGCUCUCGGU-CGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 121854 0.74 0.738267
Target:  5'- -gGAACAUAaGCGAGGGUCGGCGcaagcuUCCa -3'
miRNA:   3'- aaUUUGUAU-CGCUCUCGGUCGCu-----GGG- -5'
24375 5' -51.5 NC_005264.1 + 68986 0.73 0.768221
Target:  5'- --cAGCuUAGCG--GGCCAGUGGCCCg -3'
miRNA:   3'- aauUUGuAUCGCucUCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 131699 0.73 0.777957
Target:  5'- -cAAGCGUAGCGuGGGCCugcGCGGCg- -3'
miRNA:   3'- aaUUUGUAUCGCuCUCGGu--CGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 84305 0.72 0.815392
Target:  5'- ---cGCAUAGCGuaaacaAGAcGCCAGCGGCgCg -3'
miRNA:   3'- aauuUGUAUCGC------UCU-CGGUCGCUGgG- -5'
24375 5' -51.5 NC_005264.1 + 136544 0.72 0.815392
Target:  5'- -cGGACGaagacGCGGGAGCCGaucGCGAUCCa -3'
miRNA:   3'- aaUUUGUau---CGCUCUCGGU---CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 139754 0.72 0.841613
Target:  5'- -cAGACAacGCGGGAcauGCCGGCGucuCCCg -3'
miRNA:   3'- aaUUUGUauCGCUCU---CGGUCGCu--GGG- -5'
24375 5' -51.5 NC_005264.1 + 144087 0.72 0.844974
Target:  5'- -aAGAUGUcggAGCGcgccucgucuuucucGGAGaCCAGCGACCCa -3'
miRNA:   3'- aaUUUGUA---UCGC---------------UCUC-GGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 140856 0.72 0.849953
Target:  5'- -------aGGCGAcgacAGCCGGCGGCCCu -3'
miRNA:   3'- aauuuguaUCGCUc---UCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 125696 0.72 0.849953
Target:  5'- -cGAACAUGGaGAGAccGCCGGCG-CCUg -3'
miRNA:   3'- aaUUUGUAUCgCUCU--CGGUCGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 9489 0.71 0.865985
Target:  5'- ---cGCGUcAGCGAGucAGCCAGCGucaggcgcggcGCCCu -3'
miRNA:   3'- aauuUGUA-UCGCUC--UCGGUCGC-----------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 128516 0.71 0.865985
Target:  5'- ---cGCGUcAGCGAGucAGCCAGCGucaggcgcggcGCCCu -3'
miRNA:   3'- aauuUGUA-UCGCUC--UCGGUCGC-----------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 100088 0.7 0.901983
Target:  5'- --uAGCAUGGCGgccgcGGGGCuCAGCGACg- -3'
miRNA:   3'- aauUUGUAUCGC-----UCUCG-GUCGCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.