miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 5' -51.5 NC_005264.1 + 47854 0.68 0.955036
Target:  5'- ----cCGUGGCGGGGGC-AG-GGCCCa -3'
miRNA:   3'- aauuuGUAUCGCUCUCGgUCgCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 157410 0.69 0.931719
Target:  5'- -------cGGCGAGAG-CGGCGACgCCg -3'
miRNA:   3'- aauuuguaUCGCUCUCgGUCGCUG-GG- -5'
24375 5' -51.5 NC_005264.1 + 5082 0.69 0.931719
Target:  5'- -gGAACGUggguuGGCGAggaGAGCCAgucuGCGGCCg -3'
miRNA:   3'- aaUUUGUA-----UCGCU---CUCGGU----CGCUGGg -5'
24375 5' -51.5 NC_005264.1 + 132381 0.69 0.931719
Target:  5'- aUGAACGUcggGGCc-GAGCCGG-GGCCCg -3'
miRNA:   3'- aAUUUGUA---UCGcuCUCGGUCgCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 8532 0.69 0.936892
Target:  5'- -gAAACAUcGUaaGAGGGCCAGCaaaaGCCCc -3'
miRNA:   3'- aaUUUGUAuCG--CUCUCGGUCGc---UGGG- -5'
24375 5' -51.5 NC_005264.1 + 2992 0.69 0.941809
Target:  5'- ---cAUcgAGCGccgacuGGGCCGGCGGCUCg -3'
miRNA:   3'- aauuUGuaUCGCu-----CUCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 154830 0.68 0.950448
Target:  5'- ----uCGUGGCGGGcgccucugccGGCCccgcaauGGCGGCCCg -3'
miRNA:   3'- aauuuGUAUCGCUC----------UCGG-------UCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 59994 0.68 0.954631
Target:  5'- ---cGCG-AGCGAGAcgGCCGcguggccGCGGCCCa -3'
miRNA:   3'- aauuUGUaUCGCUCU--CGGU-------CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 121850 0.68 0.954631
Target:  5'- cUAAACGgguUGGCgGAGGGCCGGuCGcgcucgcgccgucGCCCg -3'
miRNA:   3'- aAUUUGU---AUCG-CUCUCGGUC-GC-------------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 120466 0.69 0.926287
Target:  5'- -aGGGCcuccGCGGGAGCCAGCaccGGCCa -3'
miRNA:   3'- aaUUUGuau-CGCUCUCGGUCG---CUGGg -5'
24375 5' -51.5 NC_005264.1 + 86528 0.7 0.920597
Target:  5'- ---uAUAcAGCGAauGAGCCAGCaGCCCc -3'
miRNA:   3'- aauuUGUaUCGCU--CUCGGUCGcUGGG- -5'
24375 5' -51.5 NC_005264.1 + 27900 0.7 0.914649
Target:  5'- --cAGCGUcucGGCGAGGGUgAGCGACg- -3'
miRNA:   3'- aauUUGUA---UCGCUCUCGgUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 125159 0.74 0.728068
Target:  5'- ---uGCGggagGGCGAGGGCCGcGCG-CCCg -3'
miRNA:   3'- aauuUGUa---UCGCUCUCGGU-CGCuGGG- -5'
24375 5' -51.5 NC_005264.1 + 136544 0.72 0.815392
Target:  5'- -cGGACGaagacGCGGGAGCCGaucGCGAUCCa -3'
miRNA:   3'- aaUUUGUau---CGCUCUCGGU---CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 144087 0.72 0.844974
Target:  5'- -aAGAUGUcggAGCGcgccucgucuuucucGGAGaCCAGCGACCCa -3'
miRNA:   3'- aaUUUGUA---UCGC---------------UCUC-GGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 140856 0.72 0.849953
Target:  5'- -------aGGCGAcgacAGCCGGCGGCCCu -3'
miRNA:   3'- aauuuguaUCGCUc---UCGGUCGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 128516 0.71 0.865985
Target:  5'- ---cGCGUcAGCGAGucAGCCAGCGucaggcgcggcGCCCu -3'
miRNA:   3'- aauuUGUA-UCGCUC--UCGGUCGC-----------UGGG- -5'
24375 5' -51.5 NC_005264.1 + 88957 0.7 0.908443
Target:  5'- ---uGCu--GCGAGAGUCGGCGACg- -3'
miRNA:   3'- aauuUGuauCGCUCUCGGUCGCUGgg -5'
24375 5' -51.5 NC_005264.1 + 113494 0.7 0.908443
Target:  5'- --------cGCGAGuGCCAaccGCGACCCu -3'
miRNA:   3'- aauuuguauCGCUCuCGGU---CGCUGGG- -5'
24375 5' -51.5 NC_005264.1 + 153270 0.7 0.91404
Target:  5'- aUAGACgaacccggcuucuGUAGCGAGGcGCgGGCGACgCg -3'
miRNA:   3'- aAUUUG-------------UAUCGCUCU-CGgUCGCUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.