miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24376 3' -49.4 NC_005264.1 + 92289 0.65 0.998461
Target:  5'- --uCGUaGCUcGGGUgccacgucuccgucGAGUACAGGAACa -3'
miRNA:   3'- cguGCAaCGA-CUCG--------------UUCAUGUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 31715 0.66 0.998277
Target:  5'- cGCGCGggGCguacuuguucgcgucGuGUAAGaGCAGGGGCg -3'
miRNA:   3'- -CGUGCaaCGa--------------CuCGUUCaUGUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 150741 0.66 0.998277
Target:  5'- cGCGCGggGCguacuuguucgcgucGuGUAAGaGCAGGGGCg -3'
miRNA:   3'- -CGUGCaaCGa--------------CuCGUUCaUGUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 23626 0.66 0.998245
Target:  5'- cGCugGcgauugGCUuaGAGCcauAGUACAGGAccgGCa -3'
miRNA:   3'- -CGugCaa----CGA--CUCGu--UCAUGUCCU---UG- -5'
24376 3' -49.4 NC_005264.1 + 75410 0.66 0.998245
Target:  5'- uGCGCGgccGC-GGGCAGuGUACGGcGGGCc -3'
miRNA:   3'- -CGUGCaa-CGaCUCGUU-CAUGUC-CUUG- -5'
24376 3' -49.4 NC_005264.1 + 110583 0.66 0.998245
Target:  5'- uGC-CGUgGCcGGGUGAGUagGCGGGGGCc -3'
miRNA:   3'- -CGuGCAaCGaCUCGUUCA--UGUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 3663 0.66 0.998245
Target:  5'- aGCugGggGCgacuGGCAuuGGUGCGGGGc- -3'
miRNA:   3'- -CGugCaaCGac--UCGU--UCAUGUCCUug -5'
24376 3' -49.4 NC_005264.1 + 129349 0.66 0.997892
Target:  5'- aCGCGca-CUGAGCAAGcGC-GGAACg -3'
miRNA:   3'- cGUGCaacGACUCGUUCaUGuCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 90769 0.66 0.997892
Target:  5'- cGC-CGUgGCUGuGCAug-ACAGGGAUu -3'
miRNA:   3'- -CGuGCAaCGACuCGUucaUGUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 10322 0.66 0.997892
Target:  5'- aCGCGca-CUGAGCAAGcGC-GGAACg -3'
miRNA:   3'- cGUGCaacGACUCGUUCaUGuCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 36017 0.66 0.997007
Target:  5'- -gGCGUUGCccgccaauacucUGAGCGA--GCGGGAAa -3'
miRNA:   3'- cgUGCAACG------------ACUCGUUcaUGUCCUUg -5'
24376 3' -49.4 NC_005264.1 + 74039 0.66 0.997007
Target:  5'- aGCACuacuaUGCUGAGCAGau-CAGGAu- -3'
miRNA:   3'- -CGUGca---ACGACUCGUUcauGUCCUug -5'
24376 3' -49.4 NC_005264.1 + 153178 0.66 0.997007
Target:  5'- uGCACuuacUGCUGGGCcAAGcccugcuuCAGGAGCu -3'
miRNA:   3'- -CGUGca--ACGACUCG-UUCau------GUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 162173 0.67 0.996461
Target:  5'- aGCACGg-GUgGAGCGGGgagGgGGGGGCg -3'
miRNA:   3'- -CGUGCaaCGaCUCGUUCa--UgUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 43146 0.67 0.996461
Target:  5'- aGCACGg-GUgGAGCGGGgagGgGGGGGCg -3'
miRNA:   3'- -CGUGCaaCGaCUCGUUCa--UgUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 36509 0.67 0.996461
Target:  5'- aGCGCGcgGCcucgacgaGGCGGGcGCAGGAGCc -3'
miRNA:   3'- -CGUGCaaCGac------UCGUUCaUGUCCUUG- -5'
24376 3' -49.4 NC_005264.1 + 2506 0.67 0.995122
Target:  5'- aGCACacaUGCcGGGgAGGUACAGGGugcGCa -3'
miRNA:   3'- -CGUGca-ACGaCUCgUUCAUGUCCU---UG- -5'
24376 3' -49.4 NC_005264.1 + 51641 0.67 0.993397
Target:  5'- -gACGgaGCUGAGguGGUGCAuGAAg -3'
miRNA:   3'- cgUGCaaCGACUCguUCAUGUcCUUg -5'
24376 3' -49.4 NC_005264.1 + 85590 0.68 0.992368
Target:  5'- cCACG-UGCUGGGCAuccugauCAGGAAa -3'
miRNA:   3'- cGUGCaACGACUCGUucau---GUCCUUg -5'
24376 3' -49.4 NC_005264.1 + 104166 0.68 0.9885
Target:  5'- aCGCG-UGCcuccuccAGCAAGUugAGGAGCu -3'
miRNA:   3'- cGUGCaACGac-----UCGUUCAugUCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.