miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24376 5' -53.6 NC_005264.1 + 34255 0.67 0.954053
Target:  5'- -gGCUUcu-GUAgcgagGcGCGGGCGACGCg -3'
miRNA:   3'- agCGAGucuCAUaa---C-CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 34529 0.7 0.851593
Target:  5'- aUGCgguuGGGcGUUGGCGGGguACGUg -3'
miRNA:   3'- aGCGagu-CUCaUAACCGCCCguUGCG- -5'
24376 5' -53.6 NC_005264.1 + 34611 0.67 0.949947
Target:  5'- uUUGUUCGGGGUG-UGG-GGGCGugucuGCGUc -3'
miRNA:   3'- -AGCGAGUCUCAUaACCgCCCGU-----UGCG- -5'
24376 5' -53.6 NC_005264.1 + 35158 0.67 0.94102
Target:  5'- -gGCcgCGGuGUGUcUGGUGGGCAAgGUu -3'
miRNA:   3'- agCGa-GUCuCAUA-ACCGCCCGUUgCG- -5'
24376 5' -53.6 NC_005264.1 + 35690 0.67 0.949947
Target:  5'- -aGCU-AGAGgacguguuUGUUGGCGGGUAcuugguaauuuACGCg -3'
miRNA:   3'- agCGAgUCUC--------AUAACCGCCCGU-----------UGCG- -5'
24376 5' -53.6 NC_005264.1 + 38307 0.68 0.908392
Target:  5'- aCGCcuucgCGGAGgccgacgaggGUUGGCGGGCccuggccguGAUGCu -3'
miRNA:   3'- aGCGa----GUCUCa---------UAACCGCCCG---------UUGCG- -5'
24376 5' -53.6 NC_005264.1 + 41862 0.76 0.538964
Target:  5'- -aGCUCGGGGg---GGgGGGCAACGg -3'
miRNA:   3'- agCGAGUCUCauaaCCgCCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 43448 0.66 0.968184
Target:  5'- cCGC-CAGAGaGggGGgaaguCGGGCAACGg -3'
miRNA:   3'- aGCGaGUCUCaUaaCC-----GCCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 48709 0.68 0.920247
Target:  5'- gUCGCUCgcgGGAGaugaGGCGgccGGCGAUGCu -3'
miRNA:   3'- -AGCGAG---UCUCauaaCCGC---CCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 52197 0.68 0.925807
Target:  5'- gUGCUgAGGGccguggGGCGcGGUGGCGCg -3'
miRNA:   3'- aGCGAgUCUCauaa--CCGC-CCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 52328 0.66 0.973949
Target:  5'- -aGCuUCAGGGUcgcugGGCGGGC--UGCc -3'
miRNA:   3'- agCG-AGUCUCAuaa--CCGCCCGuuGCG- -5'
24376 5' -53.6 NC_005264.1 + 56247 0.67 0.945604
Target:  5'- -gGCUUuugucGAGg--UGGCGGGCAuCGUc -3'
miRNA:   3'- agCGAGu----CUCauaACCGCCCGUuGCG- -5'
24376 5' -53.6 NC_005264.1 + 58051 0.66 0.973409
Target:  5'- cUCGCgaaAGAGgagacucgcgUGGUGGGCAuuucugGCGUu -3'
miRNA:   3'- -AGCGag-UCUCaua-------ACCGCCCGU------UGCG- -5'
24376 5' -53.6 NC_005264.1 + 59736 0.69 0.902101
Target:  5'- cUCGUUagaAGAGUcauggGGCGGcggcuGCGACGCg -3'
miRNA:   3'- -AGCGAg--UCUCAuaa--CCGCC-----CGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 64666 0.69 0.902101
Target:  5'- gUCGUUUAGGGgGUUugggccugccGGCGGGCAGgcCGUg -3'
miRNA:   3'- -AGCGAGUCUCaUAA----------CCGCCCGUU--GCG- -5'
24376 5' -53.6 NC_005264.1 + 66476 0.71 0.818122
Target:  5'- cCGCggcCAGAcucaaugcUUGGCGGGCuGCGCg -3'
miRNA:   3'- aGCGa--GUCUcau-----AACCGCCCGuUGCG- -5'
24376 5' -53.6 NC_005264.1 + 67169 0.67 0.949947
Target:  5'- aCGaa-GGGGUGgaUGGCGGccuGCAGCGCu -3'
miRNA:   3'- aGCgagUCUCAUa-ACCGCC---CGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 71363 0.67 0.954053
Target:  5'- -aGC-CGGAGgccaGGUGGGCAACa- -3'
miRNA:   3'- agCGaGUCUCauaaCCGCCCGUUGcg -5'
24376 5' -53.6 NC_005264.1 + 72268 0.69 0.867133
Target:  5'- gCGCUgCAGAGgcguacUGGCcGGCAACGa -3'
miRNA:   3'- aGCGA-GUCUCaua---ACCGcCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 74075 0.66 0.966931
Target:  5'- aCGCggcaucCGGAGUAguguggucguacaUGGCGcGGuCGACGCu -3'
miRNA:   3'- aGCGa-----GUCUCAUa------------ACCGC-CC-GUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.