miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24376 5' -53.6 NC_005264.1 + 364 0.68 0.919677
Target:  5'- aUGC-CAGAccuUAUUGGUcuuugggGGGCAGCGCc -3'
miRNA:   3'- aGCGaGUCUc--AUAACCG-------CCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 2655 0.68 0.920247
Target:  5'- cUCGuCUaCAGAGUccucUGGCcccgaccgcgaGGGCAGCGUg -3'
miRNA:   3'- -AGC-GA-GUCUCAua--ACCG-----------CCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 3289 0.67 0.945156
Target:  5'- gCGC-CAGAGUcgUGagcucgcGCGGGaucGCGCg -3'
miRNA:   3'- aGCGaGUCUCAuaAC-------CGCCCgu-UGCG- -5'
24376 5' -53.6 NC_005264.1 + 3610 0.7 0.841873
Target:  5'- cCGCcgCGGGGggccgcgagGGCGGGC-GCGCu -3'
miRNA:   3'- aGCGa-GUCUCauaa-----CCGCCCGuUGCG- -5'
24376 5' -53.6 NC_005264.1 + 4012 0.8 0.356403
Target:  5'- cUCGCccacCAGGGgcUUGGCGGGcCGAUGCa -3'
miRNA:   3'- -AGCGa---GUCUCauAACCGCCC-GUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 5679 0.69 0.874581
Target:  5'- gCGUUCccacGAGUAcagagcGcGCGGGCAACGCc -3'
miRNA:   3'- aGCGAGu---CUCAUaa----C-CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 6813 0.68 0.908392
Target:  5'- aCGgUCAGGGUGUUGcCGGagGCGGCGg -3'
miRNA:   3'- aGCgAGUCUCAUAACcGCC--CGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 6988 0.69 0.881806
Target:  5'- -gGCgCGGGGUugucccuGCGGGCGGCGCc -3'
miRNA:   3'- agCGaGUCUCAuaac---CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 7909 0.73 0.672694
Target:  5'- cUCGC-CGGAGUAcUGGgGGGacgUAACGCu -3'
miRNA:   3'- -AGCGaGUCUCAUaACCgCCC---GUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 14118 0.75 0.559203
Target:  5'- aUGCUCGGcg-GUUGGCGaGGUAGCGUg -3'
miRNA:   3'- aGCGAGUCucaUAACCGC-CCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 16543 0.69 0.888115
Target:  5'- gCGCUUGcGcGUAUUucagcgcGGUGGGCGGCGCc -3'
miRNA:   3'- aGCGAGU-CuCAUAA-------CCGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 18615 0.66 0.961567
Target:  5'- aUGCUCaAGAGUGcgaaagugacgUGGUGGGguGcCGCc -3'
miRNA:   3'- aGCGAG-UCUCAUa----------ACCGCCCguU-GCG- -5'
24376 5' -53.6 NC_005264.1 + 20524 0.66 0.957548
Target:  5'- aCGuCUCu--GUGUccGGCGGGCAcgaagaaGCGCg -3'
miRNA:   3'- aGC-GAGucuCAUAa-CCGCCCGU-------UGCG- -5'
24376 5' -53.6 NC_005264.1 + 23308 0.67 0.954053
Target:  5'- aUCGC-CAcGAGUGc-GGCGGGCcacaacauCGCg -3'
miRNA:   3'- -AGCGaGU-CUCAUaaCCGCCCGuu------GCG- -5'
24376 5' -53.6 NC_005264.1 + 25910 0.66 0.964985
Target:  5'- -gGCgaaCAGA----UGGCGGGgGGCGCu -3'
miRNA:   3'- agCGa--GUCUcauaACCGCCCgUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 29467 0.69 0.874581
Target:  5'- aCGCggauuGGGg---GGCGGuGCAGCGCa -3'
miRNA:   3'- aGCGagu--CUCauaaCCGCC-CGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 30101 0.66 0.957925
Target:  5'- aUCGC---GAGUcgagauGCGGGCGGCGCg -3'
miRNA:   3'- -AGCGaguCUCAuaac--CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 31178 0.66 0.97117
Target:  5'- cCGCcaaCGGucUGgcGGCGGGCAcCGCa -3'
miRNA:   3'- aGCGa--GUCucAUaaCCGCCCGUuGCG- -5'
24376 5' -53.6 NC_005264.1 + 31579 0.69 0.867888
Target:  5'- gCGC-CAGAGgugGggcgagucugcucucUGGCGaGGCGGCGCg -3'
miRNA:   3'- aGCGaGUCUCa--Ua--------------ACCGC-CCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 31955 0.69 0.895571
Target:  5'- -aGCUCGcGAGUGgcGGCgacGGGCcGCGUg -3'
miRNA:   3'- agCGAGU-CUCAUaaCCG---CCCGuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.